| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1675 |
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| Symbol | sdhA |
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| ID | 5136453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1803366 |
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| End bp | 1805132 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640533132 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001217614 |
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| Protein GI | 147673431 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.506283 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACTATTC CAGTTCGTTC TTTTGACGCC GTAGTAATCG GCGCAGGTGG TGCAGGTATG
CGTGCTGCAC TACAAATTTC TGAGCAAGGC CTAACTTGCG CACTGCTTTC AAAAGTGTTT
CCAACTCGTT CTCATACGGT ATCCGCTCAA GGCGGCATTA CCGTGGCTTT GGGTAACTCA
CATAAAGATG ATTGGCAGTG GCATATGTAT GACACGGTAA AAGGTTCCGA CTATATCGGC
GACCAAAATG CCATCGAATA CATGTGTAAA AACGGCCCGG AATCCGTGAT TGAACTTGAG
CGCATGGGGC TACCTTTTTC TCGTTTTGAG AACGGCACGA TTTATCAGCG TCCTTTTGGC
GGTCAGTCAA AAGAGTTCGG TGGTGAACAA GCTGCTCGTA CGGCAGCAGC AGCAGACCGT
ACTGGTCATG CTCTACTGCA CACGCTTTAC CAACAAAACG TTAAACATAA AACCACCATT
TTCTCGGAAT GGTATGCACT GGATCTGGTG AAAAACCAAG ATGGTGCTGT GCTCGGTTGT
ACTGCAATCT GCATGGAAAC AGGCGAAATT TGCTACTTCA AAGCCAAAGC AACAGTGCTT
GCGACAGGCG GTGCAGGTCG TATTTACGCT TCAACCACCA ATGCACACAT TAACACGGGC
GATGGTGTCG GTATGGCTTT GCGTGCTGGC GTACCAATGC AAGATATGGA AATGTGGCAA
TTCCACCCAA CGGGTATCGC GGGTGCTGGC GTTCTGGTTA CAGAAGGCTG TCGTGGCGAA
GGTGGCTATC TGCTGAATAA AGATGGTGAG CGTTTCATGG AACGTTACGC GCCTAACGCT
AAAGATCTAG CAGGTCGCGA CGTGGTTGCA CGTTCAATGA TGATCGAAAT CCGTGAAGGT
CGTGGTTGTG ATGGCCCATG GGGTCCACAC ATCAAACTGA AACTGGATCA TTTAGGTCGT
GATGTATTGG AATCTCGCCT ACCGGGTATC TGTGAACTAT CACGTACCTT TGCTCACGTG
GACCCAGTGA AAGAACCTAT TCCTGTTATC CCAACCTGTC ACTACATGAT GGGTGGCGTA
CCAACACAAG TGTCTGGTCA AGCGATCAAA CAAGACAGCC ATGGTAAAGA TGTTGAAGTC
CAAGGCTTGT TTGCTTGTGG TGAAATCGCT TCTGTATCGG TACATGGTGC CAACCGTTTA
GGCGGCAACT CACTGCTTGA TCTGGTGGTA TTTGGCCGCG CAACGGGTCT ACATCTTGGT
GAAACTCTGC GTGCTCAAGC TGAGGCTCGC CCTGCGACTG CATCGGATAT CGAAGCTTCT
CTGGCTCGTA CTATGCGTTG GGAAAACAGC AAAGGTGGCG AAGATCCTGT CGTGATTCGT
AAAGATCTGC AGCGCTGCAT GCAAAACAAC TTCTCGGTAT TCCGTGAAGG TAAGGCGATG
GCTGAGGGGC TGGAAGAGCT CAAAGTCATC CGCGAACGTT TGAAAAATGC CCATCTGGCG
GACAAATCAA CCGAATTTAA CACTCAACGT ATTGAGTGTT TAGAGTTGGA CAACCTGATG
GAAACGGCAT TTTCGACTGC AGTAGCGGCA AACTACCGTA CTGAAAGCCG TGGTGCACAT
GCGCGTTTTG ACTATCCAGA GCGTGATGAT GAGAACTGGT TGTGCCACTC AATCTACAAT
CCGGAAACGG AACAGATGAG TAAGCGTGAG GTCAATATGA CACCGGTTTA CCGTGACCCG
TTCCCGCCTA AAGTGCGTAC ATATTAA
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| Protein sequence | MTIPVRSFDA VVIGAGGAGM RAALQISEQG LTCALLSKVF PTRSHTVSAQ GGITVALGNS
HKDDWQWHMY DTVKGSDYIG DQNAIEYMCK NGPESVIELE RMGLPFSRFE NGTIYQRPFG
GQSKEFGGEQ AARTAAAADR TGHALLHTLY QQNVKHKTTI FSEWYALDLV KNQDGAVLGC
TAICMETGEI CYFKAKATVL ATGGAGRIYA STTNAHINTG DGVGMALRAG VPMQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLAGRDVVA RSMMIEIREG
RGCDGPWGPH IKLKLDHLGR DVLESRLPGI CELSRTFAHV DPVKEPIPVI PTCHYMMGGV
PTQVSGQAIK QDSHGKDVEV QGLFACGEIA SVSVHGANRL GGNSLLDLVV FGRATGLHLG
ETLRAQAEAR PATASDIEAS LARTMRWENS KGGEDPVVIR KDLQRCMQNN FSVFREGKAM
AEGLEELKVI RERLKNAHLA DKSTEFNTQR IECLELDNLM ETAFSTAVAA NYRTESRGAH
ARFDYPERDD ENWLCHSIYN PETEQMSKRE VNMTPVYRDP FPPKVRTY
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