| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1654 |
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| Symbol | fliA |
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| ID | 5135514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1774273 |
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| End bp | 1775007 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640533111 |
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| Product | flagellar biosynthesis sigma factor |
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| Protein accession | YP_001217593 |
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| Protein GI | 147674794 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0000445498 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGAATAAAG CGCTTACATA CGATCAATAC GGAAATCTTA ATAGCCAGCA GCTATTTCTT
GAGAAGTACT CTGTATTGGT TAAGCGTATC GCTCATCATT TGATTGGTCG TCTTCCGCCC
AGTGTTCTGA TCGAAGACCT CATTCAAGCT GGCATGGTTG GTTTGCTTGA GGCACAAAAA
AATTATGATG GAAGTAAAGG CGCGAGCTTT GAAACCTATG CCGGAATTCG GATTCGTGGG
GCTATGCTCG ACGATATCCG ACGTGGTGAC TGGGTTCCGC GATCTGTGCA CAAACATAAT
CGGGAAATCA GTCAAGCGAT TGCAGTGCTC GAGGGAGAAC TCAATCGCGA TCCAACGGAT
GCTGAAGTGG CGAAGTTTTT AAACATGTCA CTAGAGCAGT ATCACAGCGT GCTGATGGAC
ATTAACTGTT CACGTATTGT TGGGATAGAG GATCTCGGTG TTTCTGACGA CGCGATTTCA
CCGTTTGAAG AGGGGGAAGA TAACTCGCCT TTTCACGGTG TCGCTGAAGA ATCTTTCCGT
AAAGCACTCG TTGAATCAAT AAAATCGCTC CCGGAGCGTG AAGCTTTGGT ACTTTCGCTC
TATTATGATG AAGAGCTAAA CTTAAAAGAA ATTGGTGAGG TACTTGGAGT TAGTGAATCT
CGCGTCAGCC AGATACTCAG CCAATCTATG CAGCGGCTAA GAACAAAGTT AAGTTCTTGG
ACTCGGAATG ACTAA
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| Protein sequence | MNKALTYDQY GNLNSQQLFL EKYSVLVKRI AHHLIGRLPP SVLIEDLIQA GMVGLLEAQK
NYDGSKGASF ETYAGIRIRG AMLDDIRRGD WVPRSVHKHN REISQAIAVL EGELNRDPTD
AEVAKFLNMS LEQYHSVLMD INCSRIVGIE DLGVSDDAIS PFEEGEDNSP FHGVAEESFR
KALVESIKSL PEREALVLSL YYDEELNLKE IGEVLGVSES RVSQILSQSM QRLRTKLSSW
TRND
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