| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1640 |
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| Symbol | ccmF |
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| ID | 5135811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1761608 |
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| End bp | 1763563 |
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| Gene Length | 1956 bp |
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| Protein Length | 651 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640533097 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_001217579 |
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| Protein GI | 147674378 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0476911 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGCTG AAATTGGCCA CTTTGCACTG ATTGTATCGC TCAGCTTAGC GATATTACTC
AGTGTGCTGC CATTAGTTGG GGCGTCACGC AACAACACAC TATTGATGAA CACGGCTCGC
CCTTTGGCAT GGGGTATGTT CTTTTTGCTG TCGATCTCGT TTGCGGTTTT GCTGTGGGCA
TTCTATATCA ATGATTTTAC AGTGCAATAT GTGGCAAGTA ACTCCAATAG TGAGCTGCCT
TGGTACTATC GCCTCACTGC TGTATGGGGC GCGCATGAAG GTTCATTACT GCTTTGGGTG
CTTATCCAAG CGGCTTGGAC TGTGGCTGTC GCGAGTTTTA GCCGCGGTAT GCCACAAGAA
TCGGTAGCGC GTGTGCTTGC GGTGATGGGG ATGATTACTG TTGGGTTCTT ACTCTTCATC
ATTCTAACGT CTAACCCGTT TTTACGCACC TTGCCTTATT TTCCGATTGA CGGCCGTGAT
TTAAATCCGC TGCTGCAAGA CCCCGGGTTA ATCATTCACC CGCCTATGTT GTACATGGGA
TATGTGGGAT TCTCCGTGGC CTTCTCGTTT GCGATTGCTT CTTTGATGAC AGGCCGTCTC
GACACGGCAT GGGCACGTTG GTCACGACCT TGGACAACGG CCGCTTGGCT CTTTTTGACG
CTGGGTATCG TACTGGGTTC ATGGTGGGCT TACTACGAAC TTGGCTGGGG CGGTTGGTGG
TTCTGGGATC CAGTGGAAAA CGCCTCTTTC ATGCCTTGGC TTGCCGGAAC AGCGCTGATG
CACTCATTAG CGGTGACTGA AAAACGCGGC ACGTTCAAAG CGTGGACGGT ACTGCTGGCG
ATTTCTGCAT TCTCGTTGAG CCTATTGGGC ACCTTCTTAG TGCGCTCAGG CATCTTGGTT
TCGGTGCATG CTTTCGCCTC CGATCCGGCG CGCGGTATGT TCATTCTCGG CTTCTTGATT
GCGGTGATTG GTGGTTCACT ACTGCTATTT GCGATCAAAG GCGCTTCAGT ACGAGTGCGT
GGTAATTTTG AGCTGGTATC TCGTGAAAAC AGCTTGTTGG TAAACAACGT GCTGCTGATG
ACCGCACTCG CGGTGGTACT GATTGGTACC TTGTTGCCTT TAGTGCACAA ACAACTGGGT
CTTGGTTCCG TCTCTATCGG TGCGCCTTTC TTTAACATGC TGTTTGCCTG GTTGATGATT
CCTTTTGCAT TTTTTATGGG AATTGGTCCA CTGATCCGCT GGAAGCGCGA TCAAATCTCC
ACACTCTTTA AACCTATGCT CATCACAGCG ATGGCATCGT TAGTATTGGC AGCGTTGATG
ATGTGGCTGA ATGCTCCGAC GTTTAGCCCA ATGGCTTATC TTGGTTGGGT CATGGCGTGG
TGGATCTTAC TGTTACACGC TTATGAACTG CACACGCGAG CGACTCATCG TCACCGCTTC
ATAGTTGGGG TGAAGAAACT GCAACGTAGC CACTGGGCGA TGATGCTTGG TCATGTTGGT
TTAGCGGTGA GCATCATTGG TATTGCTATG GTGCAAAACT ACAGCATTGA ACGTGATGTG
CGTTTGGCTC CGGGAGATAA CTTCCAACTC AATGAGTACA ACTTTTACTT CCAAGGTGTG
CGTGATAAAG ATGGACCGAA CTACGATGGC TACATTGCTG ATTTTGAAAT CACTAGCCAA
GGCCAATATG TCAATACATT GCATGCCGAG AAACGTTTCT ATCGCACCGC AAAGTCAATG
ATGACCGAAG CGGCGATCGA CCGTGGCATT ACGCGTGACC TTTACATTGC GATGGGTGAG
CGTTTGGATG ATAACCGCTC TTGGGCTGTG CGTATTTATT ACAAACCTTA TGTGCGCTGG
ATTTGGGCAG GCGGCTTGCT GATGGCCATC GGTGGTGCCT TAGCCATCAG TGACAAGCGT
TACCGCTTTA GAAAAAACGC ACATCAGGAG GCTTAA
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| Protein sequence | MIAEIGHFAL IVSLSLAILL SVLPLVGASR NNTLLMNTAR PLAWGMFFLL SISFAVLLWA
FYINDFTVQY VASNSNSELP WYYRLTAVWG AHEGSLLLWV LIQAAWTVAV ASFSRGMPQE
SVARVLAVMG MITVGFLLFI ILTSNPFLRT LPYFPIDGRD LNPLLQDPGL IIHPPMLYMG
YVGFSVAFSF AIASLMTGRL DTAWARWSRP WTTAAWLFLT LGIVLGSWWA YYELGWGGWW
FWDPVENASF MPWLAGTALM HSLAVTEKRG TFKAWTVLLA ISAFSLSLLG TFLVRSGILV
SVHAFASDPA RGMFILGFLI AVIGGSLLLF AIKGASVRVR GNFELVSREN SLLVNNVLLM
TALAVVLIGT LLPLVHKQLG LGSVSIGAPF FNMLFAWLMI PFAFFMGIGP LIRWKRDQIS
TLFKPMLITA MASLVLAALM MWLNAPTFSP MAYLGWVMAW WILLLHAYEL HTRATHRHRF
IVGVKKLQRS HWAMMLGHVG LAVSIIGIAM VQNYSIERDV RLAPGDNFQL NEYNFYFQGV
RDKDGPNYDG YIADFEITSQ GQYVNTLHAE KRFYRTAKSM MTEAAIDRGI TRDLYIAMGE
RLDDNRSWAV RIYYKPYVRW IWAGGLLMAI GGALAISDKR YRFRKNAHQE A
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