Gene VC0395_A1602 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1602 
Symboltmk 
ID5137750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand- 
Start bp1723338 
End bp1723976 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content48% 
IMG OID640533059 
Productthymidylate kinase 
Protein accessionYP_001217543 
Protein GI147673617 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0125] Thymidylate kinase 
TIGRFAM ID[TIGR00041] thymidylate kinase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.101784 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCAA AATTTATCGT AATTGAAGGT CTTGAAGGGG CGGGCAAAAG CACGGCGATT 
CAAGTGGTGG TAGAAACCTT ACAGCAAAAT GGGATTGATC ACATCACTCG CACTCGTGAA 
CCCGGCGGTA CGCTGCTGGC TGAGAAGCTG CGCGCGTTAG TGAAAGAAGA GCACCCGGGC 
GAAGAGCTTC AAGATATTAC TGAGTTACTC TTGGTGTATG CCGCGCGAGT ACAACTGGTG 
GAAAATGTTA TTAAACCCGC GTTAGCAAGA GGTGAGTGGG TGGTCGGTGA TCGCCATGAT 
ATGTCTTCTC AAGCTTATCA AGGTGGTGGC CGACAAATTG CACCAAGCAC GATGCAAAGC 
CTCAAACAGA CCGCGCTTGG GGATTTCAAA CCCGACTTAA CCTTATATTT GGATATCGAC 
CCTAAGCTTG GTTTGGAACG TGCTCGCGGC CGTGGTGAGT TGGATCGCAT TGAAAAAATG 
GACATCAGCT TTTTTGAGCG TGCTCGTGAG CGTTACCTTG AATTAGCCAA TAGCGATGAT 
TCTGTGGTTA TGATTGATGC AGCACAGTCG ATTGAACAGG TCACGGCCGA TATTCGTCGT 
GCTTTACAAG ATTGGTTGAG TCAAGTTAAC CGTGTCTAA
 
Protein sequence
MNAKFIVIEG LEGAGKSTAI QVVVETLQQN GIDHITRTRE PGGTLLAEKL RALVKEEHPG 
EELQDITELL LVYAARVQLV ENVIKPALAR GEWVVGDRHD MSSQAYQGGG RQIAPSTMQS 
LKQTALGDFK PDLTLYLDID PKLGLERARG RGELDRIEKM DISFFERARE RYLELANSDD 
SVVMIDAAQS IEQVTADIRR ALQDWLSQVN RV