Gene VC0395_A1593 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1593 
Symbol 
ID5135421 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1712419 
End bp1713636 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content46% 
IMG OID640533050 
ProductROK family transcriptional regulator 
Protein accessionYP_001217534 
Protein GI147675300 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1940] Transcriptional regulator/sugar kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones45 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACATGG CTCAACCCGG CCATATTGAT CATATTAAGC AGATCAATGC GGGCCGCGTA 
TACAAACTAA TAGACCAAAA AGGGCCAATC TCTCGCATCG ATTTATCGAA AGAGAGTGAG
CTTGCGCCAG CCAGTATTAC CAAAATTACC CGTGAATTGA TTGATGCGCA CTTGATTCAT
GAAACGACGG TTCAAGAGGC GATCAGTCGA GGTCGACCTG CTGTTGGCCT TCAGACCAAT
AATCTTGGTT GGCAGTTTCT CTCAATGCGG CTCGGTCGAG GTTATCTCAC CATTGCTCTC
CACGAGTTGG GTGGAGAAGT GTTGATTGAT ACCAAAATTG ATATCCATGA AATCGATCAA
GATGATGTGT TAGCCCGGTT ATTGTTTGAA ATTGAAGAGT TTTTTCAAAC CTACGCCGCG
CAGTTAGATC GTGTAACCAG TATTGCTATT ACGTTGCCGG GATTGGTCAA TTCTGAGCAG
GGTATAGTGC TGCAAATGCC GCACTACAAT GTCAAAAATT TAGCTTTAGG GCCAGAAATT
TATAAAGCCA CTGGATTGCC TGTGTTTGTT GCAAATGACA CGCGGGCTTG GGCTTTAGCA
GAGAAATTGT TTGGTCATTC ACAAGATGTC GATAATTCTG TGTTGATCTC CATTCACCAC
GGACTTGGTG CAGGTATTGT GCTCGATGGA CGTGTATTGC AAGGTCGCCA TGGCAATATC
GGTGAGCTAG GGCATATTCA AATTGATCCG CAAGGTAAAC GTTGCCATTG CGGAAACTAC
GGCTGCTTAG AGACCGTGGC GTCTTCACAA GCGATTCGCG ATCAGGTCAC GGCGCGCATT
CAAGCCGGAG AGCCTAGTTG CCTCGCGACA GTGGAAGAAA TTTCGATAGA AGATATTTGT
GCTGCTGCCG CAGATGGGGA TCCGCTTGCT GTAGATGTGA TTCAACAGTT GGGGCGTTAT
TTAGGTGCTG CGATCGCAAT TGTGATTAAC TTATTCAACC CAGAGAAAAT CTTAATTGGC
GGTGTCATTA ATCAGGCGAA ATCGATTCTT TATCCCTCTA TTGAGCAGTG TATTCGTGAG
CAGAGTTTGC CGGTTTACCA TCAAGATTTG AAGTTGGTCG AGTCGCGTTT CTATAAACAA
GCGACCATGC CCGGTGCAGC TTTGATCAAG CAGGCGCTCT ATGATGGTCT ACTCTTAATG
AAAGTGGTCG AAGGATAA
 
Protein sequence
MYMAQPGHID HIKQINAGRV YKLIDQKGPI SRIDLSKESE LAPASITKIT RELIDAHLIH 
ETTVQEAISR GRPAVGLQTN NLGWQFLSMR LGRGYLTIAL HELGGEVLID TKIDIHEIDQ
DDVLARLLFE IEEFFQTYAA QLDRVTSIAI TLPGLVNSEQ GIVLQMPHYN VKNLALGPEI
YKATGLPVFV ANDTRAWALA EKLFGHSQDV DNSVLISIHH GLGAGIVLDG RVLQGRHGNI
GELGHIQIDP QGKRCHCGNY GCLETVASSQ AIRDQVTARI QAGEPSCLAT VEEISIEDIC
AAAADGDPLA VDVIQQLGRY LGAAIAIVIN LFNPEKILIG GVINQAKSIL YPSIEQCIRE
QSLPVYHQDL KLVESRFYKQ ATMPGAALIK QALYDGLLLM KVVEG