Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1593 |
Symbol | |
ID | 5135421 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1712419 |
End bp | 1713636 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640533050 |
Product | ROK family transcriptional regulator |
Protein accession | YP_001217534 |
Protein GI | 147675300 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1940] Transcriptional regulator/sugar kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 45 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTACATGG CTCAACCCGG CCATATTGAT CATATTAAGC AGATCAATGC GGGCCGCGTA TACAAACTAA TAGACCAAAA AGGGCCAATC TCTCGCATCG ATTTATCGAA AGAGAGTGAG CTTGCGCCAG CCAGTATTAC CAAAATTACC CGTGAATTGA TTGATGCGCA CTTGATTCAT GAAACGACGG TTCAAGAGGC GATCAGTCGA GGTCGACCTG CTGTTGGCCT TCAGACCAAT AATCTTGGTT GGCAGTTTCT CTCAATGCGG CTCGGTCGAG GTTATCTCAC CATTGCTCTC CACGAGTTGG GTGGAGAAGT GTTGATTGAT ACCAAAATTG ATATCCATGA AATCGATCAA GATGATGTGT TAGCCCGGTT ATTGTTTGAA ATTGAAGAGT TTTTTCAAAC CTACGCCGCG CAGTTAGATC GTGTAACCAG TATTGCTATT ACGTTGCCGG GATTGGTCAA TTCTGAGCAG GGTATAGTGC TGCAAATGCC GCACTACAAT GTCAAAAATT TAGCTTTAGG GCCAGAAATT TATAAAGCCA CTGGATTGCC TGTGTTTGTT GCAAATGACA CGCGGGCTTG GGCTTTAGCA GAGAAATTGT TTGGTCATTC ACAAGATGTC GATAATTCTG TGTTGATCTC CATTCACCAC GGACTTGGTG CAGGTATTGT GCTCGATGGA CGTGTATTGC AAGGTCGCCA TGGCAATATC GGTGAGCTAG GGCATATTCA AATTGATCCG CAAGGTAAAC GTTGCCATTG CGGAAACTAC GGCTGCTTAG AGACCGTGGC GTCTTCACAA GCGATTCGCG ATCAGGTCAC GGCGCGCATT CAAGCCGGAG AGCCTAGTTG CCTCGCGACA GTGGAAGAAA TTTCGATAGA AGATATTTGT GCTGCTGCCG CAGATGGGGA TCCGCTTGCT GTAGATGTGA TTCAACAGTT GGGGCGTTAT TTAGGTGCTG CGATCGCAAT TGTGATTAAC TTATTCAACC CAGAGAAAAT CTTAATTGGC GGTGTCATTA ATCAGGCGAA ATCGATTCTT TATCCCTCTA TTGAGCAGTG TATTCGTGAG CAGAGTTTGC CGGTTTACCA TCAAGATTTG AAGTTGGTCG AGTCGCGTTT CTATAAACAA GCGACCATGC CCGGTGCAGC TTTGATCAAG CAGGCGCTCT ATGATGGTCT ACTCTTAATG AAAGTGGTCG AAGGATAA
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Protein sequence | MYMAQPGHID HIKQINAGRV YKLIDQKGPI SRIDLSKESE LAPASITKIT RELIDAHLIH ETTVQEAISR GRPAVGLQTN NLGWQFLSMR LGRGYLTIAL HELGGEVLID TKIDIHEIDQ DDVLARLLFE IEEFFQTYAA QLDRVTSIAI TLPGLVNSEQ GIVLQMPHYN VKNLALGPEI YKATGLPVFV ANDTRAWALA EKLFGHSQDV DNSVLISIHH GLGAGIVLDG RVLQGRHGNI GELGHIQIDP QGKRCHCGNY GCLETVASSQ AIRDQVTARI QAGEPSCLAT VEEISIEDIC AAAADGDPLA VDVIQQLGRY LGAAIAIVIN LFNPEKILIG GVINQAKSIL YPSIEQCIRE QSLPVYHQDL KLVESRFYKQ ATMPGAALIK QALYDGLLLM KVVEG
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