Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1563 |
Symbol | |
ID | 5137464 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 1682343 |
End bp | 1683557 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640533020 |
Product | aminotransferase AlaT |
Protein accession | YP_001217504 |
Protein GI | 147673982 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAAAATA TCGGGATGTC GTCAAAACTC GATAATGTCT GCTATGACAT TCGAGGACCA GTGCTTAAAC ATGCTAAACG CATGGAAGAA GAAGGGCATA AAATACTGAA GCTTAACATC GGTAACCCTG CCCCGTTTGG TTTCGACGCC CCAGACGAGA TCCTAGTCGA TGTGATCCGT AACCTACCTA CTTCACAAGG TTACTGTGAC TCGAAAGGCA TTTATTCCGC TCGTAAAGCG GTGGTGCAGT ACTACCAGAA AAAAGGTATC CGCAGTCTGG ACGTCGAAGA TGTGTACATC GGCAACGGTG CATCAGAGCT TATCGTGATG GCGATGCAAG CCCTGCTCAA CAATGGCGAT GAAATGCTGG TACCTGCCCC TGATTACCCA CTGTGGACAG CCGCGGTAGC ACTTTCTGGC GGCAAAGCCG TGCACTACAT CTGTGATGAA GAAGCCGATT GGTATCCTGA CCTCGACGAT ATTCGCAGCA AAATCACCCC GAAAACCCGT GGCATTGTGC TGATCAACCC CAATAACCCA ACCGGTGCGG TTTACAGTCG TGATTTCTTG CTGGAAATCA TCGAGATTGC TCGCAAGCAC AAGCTGATGA TTTTCGCCGA TGAGATTTAC GACAAAGTGC TGTACGACGG CGCGGTGCAT ACCTCAATCG CCACCTTAGC GGATGATGTA TTAGTCGTCA CCTTCAACGG CTTATCCAAA GCTTACCGTG TTTGTGGTTT CCGTGGTGGC TGGATGTTCC TGACTGGCCC CAAACAGCAA GCACAAGGCT ATATTGCAGG GCTCGATATG CTGGCCTCGA TGCGCTTGTG TGCCAACGTG CCAATGCAAC ATGCCATTCA AACCGCACTC GGCGGCTATC AAAGTATCAA TGAGCTGATT TTGCCGGGCG GCCGACTGCT GGAACAGCGT GATCGCGCAT GGGAGCTGAT TAACCAGATC CCGGGGATTT CTTGCGTGAA GCCAAAAGGC GCGATGTACC TGTTCCCGAA AATTGATACC AAAATGTATC CGATCAAAGA TGACCAGAAA ATGGTGCTTG ATTTCCTAGT GCAAGAAAAA GTGCTGCTAG TACAAGGCAG CGGCTTTAAC TGGCCAAAAC CGGATCACTT CCGCATTGTG ACTCTGCCTC ATGTGGAAGA TCTGGAAATC GCCATCAGTC GCTTTGAACG CTTTATCACG ACTTACAGCC AATAA
|
Protein sequence | MQNIGMSSKL DNVCYDIRGP VLKHAKRMEE EGHKILKLNI GNPAPFGFDA PDEILVDVIR NLPTSQGYCD SKGIYSARKA VVQYYQKKGI RSLDVEDVYI GNGASELIVM AMQALLNNGD EMLVPAPDYP LWTAAVALSG GKAVHYICDE EADWYPDLDD IRSKITPKTR GIVLINPNNP TGAVYSRDFL LEIIEIARKH KLMIFADEIY DKVLYDGAVH TSIATLADDV LVVTFNGLSK AYRVCGFRGG WMFLTGPKQQ AQGYIAGLDM LASMRLCANV PMQHAIQTAL GGYQSINELI LPGGRLLEQR DRAWELINQI PGISCVKPKG AMYLFPKIDT KMYPIKDDQK MVLDFLVQEK VLLVQGSGFN WPKPDHFRIV TLPHVEDLEI AISRFERFIT TYSQ
|
| |