Gene VC0395_A1562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1562 
SymbolmenF 
ID5135977 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1680821 
End bp1682128 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content53% 
IMG OID640533019 
Productmenaquinone-specific isochorismate synthase 
Protein accessionYP_001217503 
Protein GI147673372 
COG category[H] Coenzyme transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1169] Isochorismate synthase 
TIGRFAM ID[TIGR00543] isochorismate synthases 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTTGCATT TTTATCAGGC CGTTGCTCAA TTGATGGAGC ACATCCGTGG CGCGAAGGCT 
CATGATGTTC GTTTTACTCA GCCGTTGGCC GATAAGCCTC CCTTTGCGCT GATTGACTGG
CTTGATGCCC AACCGATTTT CCCCAAATTT TACTGGCAAT CGCGTGATAC TCGTGAAGAA
GTGGTCGCGC TCGGTCAGGT GTACACGTTT ACCGATCCTG CTCCGGCGTA TGCGATTTTA
GGCGATGAGC AGCGAGTATG GGGTGGACGC TCCTTTGATG GGCATACCGC CAAAAATCCG
CGTTGTATGT CTTCCTTCTT CTTTCTACCA CAGATTGAAC TGATTCGACG GGATGAACAG
TGGTTACTCG CGGTCAATAT CAACAATGAG CCGCAGCGCA CGCTGACCGC ACTGCAAAAA
CTGCTGGTGG AAGTGCCCAC TTTGCGTTCG ATGACAGCGC ACGTCACTCG TGTCGAACAC
ACGCCAACGG CGGCTAACTG GCATGATTTG GTGGAAAAAG TGCTGGCGGG GATCACCGAA
AAACAGTTTA AAAAAGTGGT GTTAGCGCGT AAAACAACGC TGACATTGGA TGCACCGCTC
AGTGCGGCGC AACTGCTCAA AGCTAGCCAT GCCCAAAATC ACCACAGCTT TCACTTTCTT
TTGGCTCTCG ATTCTCGCCA CAGCTTTATG GGGTCAACCC CAGAGCGGCT CTACCTACGC
CATGGGCAGA ATCTGGAAAC CGAAGCTTTA GCGGGCACGA TTGGTCGGGG AGCTAATGCG
ACGCAAGATA TGGAACTGGC TCACTGGCTG ACGCATGACA GTAAAAACCT CAATGAAAAT
CAGTTGGTGG TAGAGGACAT CATCGAAAGC CTCGCGCCGC ACGCCGAGCA GATCCATACC
CAGCGAGAAG CGCAGCTGGT GCGATTGCGT AAAGTGCAGC ATCTGAAAAA ACGCATTGAT
GCGCAGCTTA AATCTGGGGT CAATGGCGTG CAGTTACTGG GCGTATTACA ACCTACCGCC
GCGGTTGCGG GTTTACCTCG TCAAGCGGCA CTGGCTTTCA TCGCGGAAAA TGAGCCTTTT
GCACGCGGCT GGTACGCAGG CTCCATGGGT TACTTTAGCC ATGCGCAAGC CGAGTTTTGT
GTGGCGATCC GCAGTGCTTT AGTGGTGGAT AAACAAGTTC AGCTCTATGC AGGCGCTGGC
ATTGTGCCGG GCTCGATTGC TGAGCATGAA TGGCAGGAGC TGGATAAAAA GCTCTCTACC
TTATTGAGCT TGATAACCGA CCGCTTACCG CTGGGAGTGG CATCATGA
 
Protein sequence
MLHFYQAVAQ LMEHIRGAKA HDVRFTQPLA DKPPFALIDW LDAQPIFPKF YWQSRDTREE 
VVALGQVYTF TDPAPAYAIL GDEQRVWGGR SFDGHTAKNP RCMSSFFFLP QIELIRRDEQ
WLLAVNINNE PQRTLTALQK LLVEVPTLRS MTAHVTRVEH TPTAANWHDL VEKVLAGITE
KQFKKVVLAR KTTLTLDAPL SAAQLLKASH AQNHHSFHFL LALDSRHSFM GSTPERLYLR
HGQNLETEAL AGTIGRGANA TQDMELAHWL THDSKNLNEN QLVVEDIIES LAPHAEQIHT
QREAQLVRLR KVQHLKKRID AQLKSGVNGV QLLGVLQPTA AVAGLPRQAA LAFIAENEPF
ARGWYAGSMG YFSHAQAEFC VAIRSALVVD KQVQLYAGAG IVPGSIAEHE WQELDKKLST
LLSLITDRLP LGVAS