Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1562 |
Symbol | menF |
ID | 5135977 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1680821 |
End bp | 1682128 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640533019 |
Product | menaquinone-specific isochorismate synthase |
Protein accession | YP_001217503 |
Protein GI | 147673372 |
COG category | [H] Coenzyme transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1169] Isochorismate synthase |
TIGRFAM ID | [TIGR00543] isochorismate synthases |
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Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTTGCATT TTTATCAGGC CGTTGCTCAA TTGATGGAGC ACATCCGTGG CGCGAAGGCT CATGATGTTC GTTTTACTCA GCCGTTGGCC GATAAGCCTC CCTTTGCGCT GATTGACTGG CTTGATGCCC AACCGATTTT CCCCAAATTT TACTGGCAAT CGCGTGATAC TCGTGAAGAA GTGGTCGCGC TCGGTCAGGT GTACACGTTT ACCGATCCTG CTCCGGCGTA TGCGATTTTA GGCGATGAGC AGCGAGTATG GGGTGGACGC TCCTTTGATG GGCATACCGC CAAAAATCCG CGTTGTATGT CTTCCTTCTT CTTTCTACCA CAGATTGAAC TGATTCGACG GGATGAACAG TGGTTACTCG CGGTCAATAT CAACAATGAG CCGCAGCGCA CGCTGACCGC ACTGCAAAAA CTGCTGGTGG AAGTGCCCAC TTTGCGTTCG ATGACAGCGC ACGTCACTCG TGTCGAACAC ACGCCAACGG CGGCTAACTG GCATGATTTG GTGGAAAAAG TGCTGGCGGG GATCACCGAA AAACAGTTTA AAAAAGTGGT GTTAGCGCGT AAAACAACGC TGACATTGGA TGCACCGCTC AGTGCGGCGC AACTGCTCAA AGCTAGCCAT GCCCAAAATC ACCACAGCTT TCACTTTCTT TTGGCTCTCG ATTCTCGCCA CAGCTTTATG GGGTCAACCC CAGAGCGGCT CTACCTACGC CATGGGCAGA ATCTGGAAAC CGAAGCTTTA GCGGGCACGA TTGGTCGGGG AGCTAATGCG ACGCAAGATA TGGAACTGGC TCACTGGCTG ACGCATGACA GTAAAAACCT CAATGAAAAT CAGTTGGTGG TAGAGGACAT CATCGAAAGC CTCGCGCCGC ACGCCGAGCA GATCCATACC CAGCGAGAAG CGCAGCTGGT GCGATTGCGT AAAGTGCAGC ATCTGAAAAA ACGCATTGAT GCGCAGCTTA AATCTGGGGT CAATGGCGTG CAGTTACTGG GCGTATTACA ACCTACCGCC GCGGTTGCGG GTTTACCTCG TCAAGCGGCA CTGGCTTTCA TCGCGGAAAA TGAGCCTTTT GCACGCGGCT GGTACGCAGG CTCCATGGGT TACTTTAGCC ATGCGCAAGC CGAGTTTTGT GTGGCGATCC GCAGTGCTTT AGTGGTGGAT AAACAAGTTC AGCTCTATGC AGGCGCTGGC ATTGTGCCGG GCTCGATTGC TGAGCATGAA TGGCAGGAGC TGGATAAAAA GCTCTCTACC TTATTGAGCT TGATAACCGA CCGCTTACCG CTGGGAGTGG CATCATGA
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Protein sequence | MLHFYQAVAQ LMEHIRGAKA HDVRFTQPLA DKPPFALIDW LDAQPIFPKF YWQSRDTREE VVALGQVYTF TDPAPAYAIL GDEQRVWGGR SFDGHTAKNP RCMSSFFFLP QIELIRRDEQ WLLAVNINNE PQRTLTALQK LLVEVPTLRS MTAHVTRVEH TPTAANWHDL VEKVLAGITE KQFKKVVLAR KTTLTLDAPL SAAQLLKASH AQNHHSFHFL LALDSRHSFM GSTPERLYLR HGQNLETEAL AGTIGRGANA TQDMELAHWL THDSKNLNEN QLVVEDIIES LAPHAEQIHT QREAQLVRLR KVQHLKKRID AQLKSGVNGV QLLGVLQPTA AVAGLPRQAA LAFIAENEPF ARGWYAGSMG YFSHAQAEFC VAIRSALVVD KQVQLYAGAG IVPGSIAEHE WQELDKKLST LLSLITDRLP LGVAS
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