| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1561 |
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| Symbol | menD |
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| ID | 5137269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1679112 |
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| End bp | 1680824 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640533018 |
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| Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
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| Protein accession | YP_001217502 |
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| Protein GI | 147675176 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
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| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCGCG ATCAAGCTTT ATTGAACCGT CTTTGGTCGC GAGTGTTACT CGAAGAGTTA
AGCCGTTTGG GAGTGACACA AGTGTGTGTG GCTCCGGGCT CTCGTTCAAC CCCGTTGACG
CTTGAGGCTA ATGCGAATAC GGCTTTCACG TTACATACTC ACTATGACGA GCGCGGCTTA
GGGTTTATGG CGCTTGGTTT AGCGAAAGCT AGCCAACAGC CTGTCGCGGT GATTGTAACC
TCGGGCACTG CAGTGGCGAA CTTATTACCA GCCATTGCTG AATCCAAACT CACCGGTGAA
CGTTTAGTGG TACTCACGGC GGATCGTCCG CTTGAGCTAG TGGGGTGTGG TGCCAATCAA
GCCATTGTGC AATCGGGGAT TTTTTCATCT CATGTCACGG CATCGCTGGA GCTGCCTAGT
CCTGCCATCC ATCATCCACT TTCTTGGCTA CTCACGTCGA TTGATGAAGT GATGGCGCGT
CAAGCCCTAC TCGGTGGCAG TGTACACATC AATTGCCCAT TTCCTGAGCC CTTGTATTCG
GCTGGGGATG AGGCGATTTA TCAACCCTAT TTACAACCTG TTCAGCGTTG GCGTGAGCAA
GCTCGGCCTT ATACCCAAGT TCATCAAGGA TTAGTGCAGA GTGTTCCCGC TGCAATCGAT
GGCTTGCTGA CTAAAGGGGT GGTGATAGTT GGCTCGCTGA GCTTGCAAGA GGCTCAAGCG
GCAAAGCGTT TTGCCAAAGC GATGGGCTGG CCGTTACTGT GCGATCCACA ATCGGGCATC
AGTAGCCAAT GGGCACATTT TGATCTCTGG CTGCAGCATC CCAAAGCACG TGAACAGCTC
AATCAAGCTC AATGTGTGGT GCAATTTGGT TCGCGGATTG TCTCCAAACG TCTGTTGCAG
TGGTTAGAAG CGTGGTGCGC CACGGGTCTT GGCGAGTATC ATTACATTGC GCCGCACAGC
GCACGCAATA ACCCTTGGCA CGCCATGCAG CAGCAGTGGG TGTGTGAGAT TAGCCACTGG
GTAGACGCTG TGCTCAGCAA ACGCTTAGCG GGTCAACATA CCCAGCAAGG TTGGGCCGAT
GAGTTAACCC ATTATGCGCA GTCGGTTCGC CAACTGGCGC AACTGCATTT CTCCTCTTCT
TCCCTGAGTG AAGTCGCACT GGCGCTAGAT TTGACGGAGC GCGCTACGCA AGCGGATCTG
TTTTTGGGCA ACAGCCTGAT TGTGCGTTTG GTGGATATAT TCAGCGCGCT TGATGGGCGT
GAAGTGTTCT CCAATCGTGG CGCATCTGGC ATTGATGGCT TAGTCGCCAC AGCGTCAGGG
GTGCAACGTG CGCGGCAAAA GCCATTACTG ATGCTGCTGG GAGATACCTC GCTACTGTAC
GATCTCAACT CGCTCGCGTT GATGCGCAAT CCTGCGCAGC CGACCGTGAT AGTCGTGACC
AATAACGACG GCGGAGCGAT TTTCGATCTC CTGCCTGTGC CGAGTGAGCA GCGCGAAGCG
CTCTATCAAA TGCCGCATGG AATGGACTTT GCTCACGCCG CATCACAATT TGGTTTAGCG
TATTGTGCGG CGCAAACCTT AGAGCACTAC CAAACCTTGG TGGAAGAGCA TTTTGCACAC
GGTGCAGGTA CTTTGCTTAT CGAGGTGAAA ACCCCGCCGC AGCAAGCTTC CATGCACATC
AAACAACTGA CATCGCAACT CCATGCTCTC TAA
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| Protein sequence | MNRDQALLNR LWSRVLLEEL SRLGVTQVCV APGSRSTPLT LEANANTAFT LHTHYDERGL
GFMALGLAKA SQQPVAVIVT SGTAVANLLP AIAESKLTGE RLVVLTADRP LELVGCGANQ
AIVQSGIFSS HVTASLELPS PAIHHPLSWL LTSIDEVMAR QALLGGSVHI NCPFPEPLYS
AGDEAIYQPY LQPVQRWREQ ARPYTQVHQG LVQSVPAAID GLLTKGVVIV GSLSLQEAQA
AKRFAKAMGW PLLCDPQSGI SSQWAHFDLW LQHPKAREQL NQAQCVVQFG SRIVSKRLLQ
WLEAWCATGL GEYHYIAPHS ARNNPWHAMQ QQWVCEISHW VDAVLSKRLA GQHTQQGWAD
ELTHYAQSVR QLAQLHFSSS SLSEVALALD LTERATQADL FLGNSLIVRL VDIFSALDGR
EVFSNRGASG IDGLVATASG VQRARQKPLL MLLGDTSLLY DLNSLALMRN PAQPTVIVVT
NNDGGAIFDL LPVPSEQREA LYQMPHGMDF AHAASQFGLA YCAAQTLEHY QTLVEEHFAH
GAGTLLIEVK TPPQQASMHI KQLTSQLHAL
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