Gene VC0395_A1554 details

Gene Information

• Locus tag: VC0395_A1554
• ID: 5135449
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 1671016
• End bp: 1673070
• Gene Length: 2055 bp
• Protein Length: 684 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640533011
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_001217495
• Protein GI: 147674320
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCATCCG GTAAATATGA TGGGTTAGAG GACTCTTTCA TGAGAGTAAA AACAAAAATA 
TTAGTCACAT TCAGCGTCGT AGGTATTTTA GTTACTGCTT TAGGCATTTG GACAATAAAA 
ACCATGTACT CAAGCTCCTC GGGGTTGAGC TACATTGTTG GCCCCGCTTG GGATACGGCA 
GATGGGGCGA TGGAAACCAC CATACAGATT GAAGCTCAGA TGCTTGCCGT CAATAGGCTC 
ATCCTAGGCG AAGATAGCCA ACGGGTTGAA CAAATACTCA ATACTGCCAT TACAGATGTC 
GATACGTCCT CTTCCCGCAT GATCGAAGCG GGTCTATTAA GTGCGGCTCA GACACAACAA 
TTTTCTCAAT TCAACTCACA GTATCAACAA TCAAGAAACG CACTGATTAC TAGCTACAAG 
AACTATATCG AGACCAAAAA ATCCTACGAT AAAGCAACGC AAGTCCTTGT CGATTTTGGT 
GAAAAACTAG AGACATTAGG TGATAGTGCC GTTGAGGAAT TAGAACGAGA ACCTAATCGG 
AACATCACTT GGCAAAGTGA TGTTATGGAA CGCTGGCAAG CCGCAGATGG CGGTATGGAA 
TCCAATATAG GCTTGCTATG GAAGCTCTAC TACACACAAC GTTTGCTGGA TGGTCAAGAT 
GATGCCACTC AAATTAAAGC CATTGAACAA GCGATTGGAT TTCAAAAACA AGCCAACAGC 
GAAATGTTCT CGACTGGCCG ATTTACTATA TCGGCAGGAG AGGAATGGAA AAATGCAAGT 
TATGAAGAAG TATTCTCCCA ATTAAACTCG CAGCATGAAC AGGCGATGAT GGCGGTCATT 
GAAAGCTATC GGAACTATCG TCAAATCTAC CAAGAGTACA CAGTAACATC ACTGGCATTA 
CTGGATTTCA TTGCCGAATT AGAAGAACTC GCAGACAGTA AAGTAGAGCA GCAAGCCGTG 
CTTATTTTAG ATGGACAAGC ATGGGCGATA TCTTCATTTA AGGTATTGAT CATTATCGCT 
TTGCTTGTAT TACTGTTGTT AGGTTGGATC CTTGTGAACC AAATTCTATC GCCTATACAA 
CGTTTGCAGG AGAGAGTAAC CGATATCTCT GAAGGTAATG GTGACTTAAC CCTGCGAGTG 
AACATCACCA CCCAAGATGA GTTTGGAGAA TTGGGCAAAT CATTCGATAA ATTTATCGAA 
AAAATACAGA ATCTTATTGC TGACATCACT CAATCTACCA ATCTCGCTAA GACCGCGGCG 
GTAGACCTGT CTGCCACGTT TAAAGTGACC GCAGAAGCCG TCAATAAACA GACATTCGAA 
GTGAATACTA TTTCGAACGC GACCACGGCG ATGACCGCCA TTTCTTCGCA AGTGATCAGT 
GGCGCGCGAG AGATAAGCCA ATCGGTACTT AACATAGATA AAAACGCGCA AAGTACACTC 
AGCAACGTTC GACAAGCCGC TCAATCGGTC AATGAACTGG TTGCAGAGGT GACACAAGGA 
ACTGAAACCA TCAACTCCTT AAAAAATCAT GTCACAAGTA TCGAGCCAGT TTTAGCCGAC 
ATTAATGGCA TTGCAGAACA AACTAATTTG CTCGCACTTA ATGCAGCGAT TGAAGCCGCT 
CGTGCGGGAG AACAAGGGCG AGGCTTTGCG GTGGTTGCCG ATGAAGTGCG TTCACTTGCT 
ACACGAACAC AAGGCAGTAC CAACACCATC CAGCAGAGCA TTACTCAATT GCGTAGCAGC 
GCCGATGAAT CGGTAAGAGT TATTAACAAC AGCATGTTAA AAGGTACTCA AACCACAGAG 
ATCACATCAC AGGCTGAAGA GTCCTTACAT CAAGTCGCGA TTGAAATCTC TCGACTAACG 
CAGATGAACC AGCAGACCTC TGAGGCGATT ACTCATCAAG AGCAATCGGT GACCAGTATT 
GCTTCTAGCC TTTCTCACTT ACAAGCACTT TGCCAAAGTG CCCAAGAAAA AATCCAACAG 
AGTGAGCACA CCATTTCAGC ACTCAAGCTA AAACAAGAAG ATTTGGCGCT AAAGATGAGT 
AAATTCAAAA TTTAG 

 

Protein sequence

MSSGKYDGLE DSFMRVKTKI LVTFSVVGIL VTALGIWTIK TMYSSSSGLS YIVGPAWDTA 
DGAMETTIQI EAQMLAVNRL ILGEDSQRVE QILNTAITDV DTSSSRMIEA GLLSAAQTQQ 
FSQFNSQYQQ SRNALITSYK NYIETKKSYD KATQVLVDFG EKLETLGDSA VEELEREPNR 
NITWQSDVME RWQAADGGME SNIGLLWKLY YTQRLLDGQD DATQIKAIEQ AIGFQKQANS 
EMFSTGRFTI SAGEEWKNAS YEEVFSQLNS QHEQAMMAVI ESYRNYRQIY QEYTVTSLAL 
LDFIAELEEL ADSKVEQQAV LILDGQAWAI SSFKVLIIIA LLVLLLLGWI LVNQILSPIQ 
RLQERVTDIS EGNGDLTLRV NITTQDEFGE LGKSFDKFIE KIQNLIADIT QSTNLAKTAA 
VDLSATFKVT AEAVNKQTFE VNTISNATTA MTAISSQVIS GAREISQSVL NIDKNAQSTL 
SNVRQAAQSV NELVAEVTQG TETINSLKNH VTSIEPVLAD INGIAEQTNL LALNAAIEAA 
RAGEQGRGFA VVADEVRSLA TRTQGSTNTI QQSITQLRSS ADESVRVINN SMLKGTQTTE 
ITSQAEESLH QVAIEISRLT QMNQQTSEAI THQEQSVTSI ASSLSHLQAL CQSAQEKIQQ 
SEHTISALKL KQEDLALKMS KFKI