Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1541 |
Symbol | |
ID | 5137616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1660077 |
End bp | 1661294 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640532998 |
Product | NupC family protein |
Protein accession | YP_001217482 |
Protein GI | 147674938 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG1972] Nucleoside permease |
TIGRFAM ID | [TIGR00804] nucleoside transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.0424261 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGGCGGCG TTATGTCATC ACTCCTCGGT ATGGGCGCAA TTTTGCTGGT TGCGTGGCTA TTTTCTACCA ATAGAAAAAA TATCAACTTG CGTACAGTTT CTTTAGCGTT ACTGCTGCAA ATCTTCTTCG CCTTACTGGT GCTGTATGTA CCTGCGGGTA AAGAGGCACT CAATCGTGTG ACGGGCGCGG TGTCACAACT GATCAACTAT GGGCAAGATG GTATCGGTTT TGTGTTTGGT GGCCTCGCCA ATGGCAGCGT AGGTTTTGTG TTTGCGATTA ATGTCCTTGG CATCATCATT TTCTTCTCTG CACTGATTTC TGGCCTTTAC CATTTAGGCA TCATGCCGAA AGTGATTAAC CTCATCGGTG GTGGTTTACA GAAATTGCTT GGCACAGGCC GTGCAGAATC CCTTTCTGCT ACCGCAAACA TTTTCGTGGG TATGATTGAA GCGCCGCTGG TGGTGAAACC TTATCTTCAT AAAATGACCG ATTCGCAATT CTTTGCAGTG ATGACGGGCG GCTTAGCGTC GGTTGCTGGC GGTACTTTGG TTGGTTATGC CTCTTTAGGT GTGGAATTGA ACTATCTGAT CGCGGCGGCT TTCATGTCTG CCCCTGCGGG TCTTTTGATG GCAAAAATCA TGTTGCCAGA AACCGAACAC GTCGATGCCG CGATTGCGCA AGATGAGTTG GATCTGCCGA AATCCACTAA CGTCGTCGAA GCGATTGCGG ATGGCGCGAT GTCGGGTGTG AAAATTGCTG TTGCGGTAGG GGCGACTTTG CTCGCTTTCG TGAGTGTGAT TGCTCTGTTA AACGGCTTGC TCGGTTGGTT TGGTGGCTGG TTTGGCATCG AGCTAAGCTT TGAACTGATC ATGGGGTATG TTTTCGCTCC GGTAGCTTGG CTGATTGGTA TTCCATGGCA TGAGGCGATC ACGGCAGGCT CGCTGATTGG TAACAAAGTG GTGGTGAACG AGTTTGTCGC TTTCATTCAA CTGATTGAAG TGAAAGAGCA ATTGAGTGCG CATTCACAAG CGATCGTGAC TTTCGCGCTG TGCGGTTTTG CGAATATTTC TACCATGGCG ATTTTGATTG GTGGTTTGGG TAGCCTTGTA CCTGAACGTC GCTCTTTTAT CTCCCAATAC GGCTTCCGTG CGATTGGCGC AGGCGTATTA GCTAACCTAA TGAGTGCATC GATCGCTGGA GTGATTTTGT CTTTGTGA
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Protein sequence | MGGVMSSLLG MGAILLVAWL FSTNRKNINL RTVSLALLLQ IFFALLVLYV PAGKEALNRV TGAVSQLINY GQDGIGFVFG GLANGSVGFV FAINVLGIII FFSALISGLY HLGIMPKVIN LIGGGLQKLL GTGRAESLSA TANIFVGMIE APLVVKPYLH KMTDSQFFAV MTGGLASVAG GTLVGYASLG VELNYLIAAA FMSAPAGLLM AKIMLPETEH VDAAIAQDEL DLPKSTNVVE AIADGAMSGV KIAVAVGATL LAFVSVIALL NGLLGWFGGW FGIELSFELI MGYVFAPVAW LIGIPWHEAI TAGSLIGNKV VVNEFVAFIQ LIEVKEQLSA HSQAIVTFAL CGFANISTMA ILIGGLGSLV PERRSFISQY GFRAIGAGVL ANLMSASIAG VILSL
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