Gene VC0395_A1541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1541 
Symbol 
ID5137616 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1660077 
End bp1661294 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content49% 
IMG OID640532998 
ProductNupC family protein 
Protein accessionYP_001217482 
Protein GI147674938 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1972] Nucleoside permease 
TIGRFAM ID[TIGR00804] nucleoside transporter 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0424261 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGGCGGCG TTATGTCATC ACTCCTCGGT ATGGGCGCAA TTTTGCTGGT TGCGTGGCTA 
TTTTCTACCA ATAGAAAAAA TATCAACTTG CGTACAGTTT CTTTAGCGTT ACTGCTGCAA
ATCTTCTTCG CCTTACTGGT GCTGTATGTA CCTGCGGGTA AAGAGGCACT CAATCGTGTG
ACGGGCGCGG TGTCACAACT GATCAACTAT GGGCAAGATG GTATCGGTTT TGTGTTTGGT
GGCCTCGCCA ATGGCAGCGT AGGTTTTGTG TTTGCGATTA ATGTCCTTGG CATCATCATT
TTCTTCTCTG CACTGATTTC TGGCCTTTAC CATTTAGGCA TCATGCCGAA AGTGATTAAC
CTCATCGGTG GTGGTTTACA GAAATTGCTT GGCACAGGCC GTGCAGAATC CCTTTCTGCT
ACCGCAAACA TTTTCGTGGG TATGATTGAA GCGCCGCTGG TGGTGAAACC TTATCTTCAT
AAAATGACCG ATTCGCAATT CTTTGCAGTG ATGACGGGCG GCTTAGCGTC GGTTGCTGGC
GGTACTTTGG TTGGTTATGC CTCTTTAGGT GTGGAATTGA ACTATCTGAT CGCGGCGGCT
TTCATGTCTG CCCCTGCGGG TCTTTTGATG GCAAAAATCA TGTTGCCAGA AACCGAACAC
GTCGATGCCG CGATTGCGCA AGATGAGTTG GATCTGCCGA AATCCACTAA CGTCGTCGAA
GCGATTGCGG ATGGCGCGAT GTCGGGTGTG AAAATTGCTG TTGCGGTAGG GGCGACTTTG
CTCGCTTTCG TGAGTGTGAT TGCTCTGTTA AACGGCTTGC TCGGTTGGTT TGGTGGCTGG
TTTGGCATCG AGCTAAGCTT TGAACTGATC ATGGGGTATG TTTTCGCTCC GGTAGCTTGG
CTGATTGGTA TTCCATGGCA TGAGGCGATC ACGGCAGGCT CGCTGATTGG TAACAAAGTG
GTGGTGAACG AGTTTGTCGC TTTCATTCAA CTGATTGAAG TGAAAGAGCA ATTGAGTGCG
CATTCACAAG CGATCGTGAC TTTCGCGCTG TGCGGTTTTG CGAATATTTC TACCATGGCG
ATTTTGATTG GTGGTTTGGG TAGCCTTGTA CCTGAACGTC GCTCTTTTAT CTCCCAATAC
GGCTTCCGTG CGATTGGCGC AGGCGTATTA GCTAACCTAA TGAGTGCATC GATCGCTGGA
GTGATTTTGT CTTTGTGA
 
Protein sequence
MGGVMSSLLG MGAILLVAWL FSTNRKNINL RTVSLALLLQ IFFALLVLYV PAGKEALNRV 
TGAVSQLINY GQDGIGFVFG GLANGSVGFV FAINVLGIII FFSALISGLY HLGIMPKVIN
LIGGGLQKLL GTGRAESLSA TANIFVGMIE APLVVKPYLH KMTDSQFFAV MTGGLASVAG
GTLVGYASLG VELNYLIAAA FMSAPAGLLM AKIMLPETEH VDAAIAQDEL DLPKSTNVVE
AIADGAMSGV KIAVAVGATL LAFVSVIALL NGLLGWFGGW FGIELSFELI MGYVFAPVAW
LIGIPWHEAI TAGSLIGNKV VVNEFVAFIQ LIEVKEQLSA HSQAIVTFAL CGFANISTMA
ILIGGLGSLV PERRSFISQY GFRAIGAGVL ANLMSASIAG VILSL