| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1540 |
|---|
| Symbol | chiA-1 |
|---|
| ID | 5136217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1657273 |
|---|
| End bp | 1659813 |
|---|
| Gene Length | 2541 bp |
|---|
| Protein Length | 846 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640532997 |
|---|
| Product | chitinase |
|---|
| Protein accession | YP_001217481 |
|---|
| Protein GI | 147675561 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3469] Chitinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.987868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGCT ATTGTTTAGC CGCCGTGATT ACCGCCAGTT TGGGGGTAAG TTACTCAGCA
CAAGCCTATA ACTGTGCCGG AGTGCCAGTG TGGGACAGCA GTACAGTGTA TGTTGGCAGT
GATAAAGTTC AAAAAACCAA CACCGCTTAC CAAGCGCGTT ACTGGACTCA GGGTAACGAT
CCGGTAACCC ATTCTGGTCA ATGGGACGCA TGGCAAATTC TTGGACAGTG TGACGGAGGG
GCGAATAACC CACCTCAAGT GTCCATTCAA TCACCACTCA ATAACGCCAA GATCCCACAA
GGCTCCGTCG TCGGATTACA AGCCAATGCC TCAGATAGTG ATGGCAGCAT TACTCAGGTG
GAGTTTTTAG TCGGCACACA GCGTATCGCG ATTGACCAAC AAGCCCCATA CCAAGTGGAT
TGGACGGCAA CGCTAGGAGC CACTTCAGTG ACCGCGATTG CGACCGATAA CCAAGGTGCA
ACCACCAGCA GCACCGTAAA TATCAGCGTA ACGCCTACTG GTAACCCAGT TCCGCCAACT
GTGACGTTGA CTAGCCCAAC GGGCAGTGAA CAGCTAACCG TGGGCGATGT TCTAGCCGTG
GCCGCAAATG CCACTGACAG TGATGGCACT GTCAACGCTG TTGAATTTTA TGTTGATGGC
CAACTTGTTG TGATCGATAG CTCTGAGCCT TATCAGTTTA ATTGGAATGC CGCTGTCGGC
AGCCATACCT TTAAAGCCAA AGCGATTGAT AACGACAACC TGTCTACCCT GAGCCAAGAA
GTGACTTTAA CGGTCGGCAG TGGCTCGAAT GCAGGTTGCG CGGGTTTACC TGTGTATTCG
GTGGGAACCG CGTATTCGGC AGGGCAGTTG GTACAAAATA AGAACCAAAA ATATCGCTGT
GATATCGCCG GTTGGTGTTC TTCCAGCTCC GGTTGGGCGT ATGAGCCAGG GGTTGGAAGT
TATTGGAAAG AAGCATGGAG TGGTTTAGGC GCTTGTTCAA CGCCACCTGT CGTGACATTA
ACCAACCCAA CGGCGAACCA AGTGATTCTT GCTGGCTCAA CCGTCAGTGT GGCGGCGCAA
GCCAGTGATG CCGATGGCTC GGTCACGCAA GTGGAGTTTT TTGCGGGCAA CAACAGCTTA
GGCGTGGTGA CTCAAGCACC TTACGCGGTT AACTGGCTAG CCACTACTAC GGGAAATCAA
ACCCTGAAAG CAGTCGCAAC CGACAACGAC AGTAACACCA GTGAAAGCGC AGTCAGCGTG
ACGGTGAGCG ATCAAGATCT GGTGGTTTCA CTGACTTCAC CGACATCCGG CCAAACCGTT
GGTCTAGGTA AACCGGTCAA TATTGCCGCC GATGCTACGT CACTAACCAA TAATGTGGCG
AAAGTGGAGT TTGTGGTCAA CGGCGCGGTA GTTGCAACGG ATACAACAGA GCCTTTTGCT
TACAGTTGGA CGCCAAGTGC GATTGGTAAC TATACCGTTG CCGCGAAAGC GACTGACGCA
GCAGGAACGA GCGTGACCTC TTCTGCTGCC GCAATCAGCG TGGTAGAGCA AGCGCAGAAG
AAACATCGCT TGATTGGTTA CTGGCATAAC TTCGTCAATG GTGCGGGTTG CCCAATTCGT
TTGGCGGATA TGTCACAAGC GTGGGATGTG ATTGATATTG CCTTTGCAGA AAACGATCGC
AACAGTACCG GAACGGTACA TTTCAACCTG TATGCCGGTG ATATTTACAG CAGTTGTCCT
GCGCTCGATC CTGCGCAATT CAAGCAAGAT ATGAAAGCAC TGCAAGCGAA AGGTAAAGTA
TTTGTCCTTT CCTTAGGTGG CGCTGAAGGC ACTATTACCC TTAACACTGA TCAAGATGAA
GCCAACTTCG TGAGCAGCCT GACTGCGTTG ATCAAAGAAT GGGGCTTTGA TGGGTTGGAT
GTGGATCTCG AAAGTGGTTC AAACCTTGTT CATGGCTCAC AAATTCAAGC GCGCTTAGGC
CGAGCATTGA AGCAAATCGA GAAAAACATC GGTGGTGATA TGTTCCTCAC TATGGCGCCT
GAACACCCTT ATGTGCAAGG TGGTATGGTT GCCTACAGTG GAATTTGGGG CGCTTACATT
CCGGTGATTA ACGAAGTGCG CGATACGCTT GATATTCTGC ATGTTCAGCT CTACAACAAC
GGTGGTTTAC CTAACCCATA CACACCGAGC GCGGCACCAG AAGGCTCTGT GGATATGATG
GTCGCCCAAT CAAAAATGTT GATTGAAGGC TTCACTTTAG CCAACGGGAC ACGCTTTGAA
CCATTGCGTG ATGACCAAGT AGCCATTGGT TTGCCATCAG GTCCAAGTTC GGCAAATTCG
GGTCAAGCTC CAACCCAAAA TATCCTTGAT GCGTTGGATT GTTTAACCAA AGGAACCCGC
TGCGGCACCA TCAAACCAGC CTTTGCCTAC CCCAATTATG CAGGCGTGAT GACCTGGTCA
ATCAACTGGG ATAAGCACGA CGGCTTTAAT TTTTCCAAAC CGGTTGGGGA TAAACTTAGC
CAGATGAATA ATGCTCAGTA A
|
|---|
| Protein sequence | MKRYCLAAVI TASLGVSYSA QAYNCAGVPV WDSSTVYVGS DKVQKTNTAY QARYWTQGND
PVTHSGQWDA WQILGQCDGG ANNPPQVSIQ SPLNNAKIPQ GSVVGLQANA SDSDGSITQV
EFLVGTQRIA IDQQAPYQVD WTATLGATSV TAIATDNQGA TTSSTVNISV TPTGNPVPPT
VTLTSPTGSE QLTVGDVLAV AANATDSDGT VNAVEFYVDG QLVVIDSSEP YQFNWNAAVG
SHTFKAKAID NDNLSTLSQE VTLTVGSGSN AGCAGLPVYS VGTAYSAGQL VQNKNQKYRC
DIAGWCSSSS GWAYEPGVGS YWKEAWSGLG ACSTPPVVTL TNPTANQVIL AGSTVSVAAQ
ASDADGSVTQ VEFFAGNNSL GVVTQAPYAV NWLATTTGNQ TLKAVATDND SNTSESAVSV
TVSDQDLVVS LTSPTSGQTV GLGKPVNIAA DATSLTNNVA KVEFVVNGAV VATDTTEPFA
YSWTPSAIGN YTVAAKATDA AGTSVTSSAA AISVVEQAQK KHRLIGYWHN FVNGAGCPIR
LADMSQAWDV IDIAFAENDR NSTGTVHFNL YAGDIYSSCP ALDPAQFKQD MKALQAKGKV
FVLSLGGAEG TITLNTDQDE ANFVSSLTAL IKEWGFDGLD VDLESGSNLV HGSQIQARLG
RALKQIEKNI GGDMFLTMAP EHPYVQGGMV AYSGIWGAYI PVINEVRDTL DILHVQLYNN
GGLPNPYTPS AAPEGSVDMM VAQSKMLIEG FTLANGTRFE PLRDDQVAIG LPSGPSSANS
GQAPTQNILD ALDCLTKGTR CGTIKPAFAY PNYAGVMTWS INWDKHDGFN FSKPVGDKLS
QMNNAQ
|
|---|
| |