| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1534 |
|---|
| Symbol | pvcB |
|---|
| ID | 5135357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1647845 |
|---|
| End bp | 1648708 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640532991 |
|---|
| Product | PvcB protein |
|---|
| Protein accession | YP_001217475 |
|---|
| Protein GI | 147673976 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2175] Probable taurine catabolism dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAGGCCA TTGATATGCC GTACAAAATT ACCGCTCTGC AACCGTTTGG AGTGATCGTA
GAACCGAAAC ATGCTCCGAT TCATGTCAAT GAGTTAGATA TTGATGAGTT ACGCGAACTC
TTTTTGCGTG AACAACTTGT GTTACTGCGT GGTTTTGAAA CCTTTGAACA TTCGGAGCAG
TTTGCGGACT ACTGCGAACG TTGGGGAGAA GTGAGTGTTT GGCCGTTTGG GCGCGTATTA
GATCTGGTAC AAAAAGAGGA TCCTGGCGAT CACATTTTTG ACAGCAGCTA CATGCCGATG
CATTGGGATG GCATGTATCG CCCACAAGTC CCTGAATACC AAATCTTTCA GTGTGTAAAG
GCTCCTTTAC CGGGGCATGG CGGGCGTACG ACCTTCAGTC ATACCATGCT GGCTTTACAG
CACGCCCCTC AGCCAGATCT TGAGCTTTGG CAGCAAGTCA CCGGACACTA CCAGCGTAAA
ATGGAGTTTT ACCACAGTAA AACCGTCTCC CCGATTGTGA TGCAGCATCC ATACCGAGAC
TATCAAGTAA TACGCTACAA CGAGCCGCAT TTTGAAGAAA ATGGCGACCT GCTCAATCCA
CCTGATGTAT CACTGTCTGG CATTACTCCT GAGCAAGCGA TCGAGTTTCA CAAAAGTTTA
CGCCGTGCAC TGTACGACCC ACGTAACTTC TACGCTCATG AGTGGCAAAC GGGTGACATA
GTGATCACCG ATAACTTCTC CTTACTCCAT GGCCGTGAAG CCTTTAACTC TCACACGCCG
CGTCACATTC GTCGTGTGCA AGTGTTAAGT AATCCTCCTT ATAACAATCC AAGCTTGGAG
TCGTACCAAT GTCCACAAAA ATAA
|
|---|
| Protein sequence | MEAIDMPYKI TALQPFGVIV EPKHAPIHVN ELDIDELREL FLREQLVLLR GFETFEHSEQ
FADYCERWGE VSVWPFGRVL DLVQKEDPGD HIFDSSYMPM HWDGMYRPQV PEYQIFQCVK
APLPGHGGRT TFSHTMLALQ HAPQPDLELW QQVTGHYQRK MEFYHSKTVS PIVMQHPYRD
YQVIRYNEPH FEENGDLLNP PDVSLSGITP EQAIEFHKSL RRALYDPRNF YAHEWQTGDI
VITDNFSLLH GREAFNSHTP RHIRRVQVLS NPPYNNPSLE SYQCPQK
|
|---|
| |