| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1523 |
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| Symbol | |
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| ID | 5135250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1637893 |
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| End bp | 1639860 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640532981 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001217466 |
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| Protein GI | 147673575 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 55 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCAGATC AGCAGTATAG AAATCATCAC TCCTTAACGA CGATGAAGAA GTCTCTACTT
GCATTTTTCA CGCTAGTATT CGTCATGGTC TTGCTGTCAA TCTGGGCCAT GGTTCGCTTT
ACTAATACTT ATAATATGCT CACCAAGTAC ACCCAACTGG CGGCTTGGTC TTTGGCGCAA
TTGGAAGTAG AGACGCTCAA TTTTACTCAT AGATTGGAGA CTTACTTATT AAATGGCAGC
CGTGAAAATC ATCAAGCGAT GAGTCTTAAT TACGATATTT TGTGGAATCG TTTCGATCTC
TTTCTAACGA GTAAAGAAAC CCAAGAACTC CGACAACAAC ACGATGCGCA AGCCATCATT
CAAGAGGTGT TCACTCAACT CAAACGCTAT GAACTGGCAG TAAGTCGAGG TGATCAACCC
GTACTGCAAG AATTGCTGCA GCTCCTCGAG CCCTACAATG CCCAAATCCG CAATTTAGCG
ATTGTCAATT TTACGGGTGA AAGTGCCAAC AGCAATATCC GTATGATTAA CGAGAATAAA
CAGCAGTTAC TCTATTTCTT CGCAGCGATT CTGCTGATGT TAATCTTGCT TTCCTATATG
ACTTATCGTT CTGCAGATTA TCAACAATTT CTCGCATGGC ATGACCCACT CACTCGGCTA
AAAAACCGTA ACTTTATCGT TAAAAAACTA AAGAAAAGAC GCCGAAATCA ACAAGAACCT
ATCGCGCTTA TCCTGTTCGA TCTTAATCGA TTCAAAGAGT TGAATGATAC GATGGGTTAC
GCTTTTGGCG ACCAGTTGCT GATTAACATT GCGGAATTAC TTACCCAACG CTGTCGCTCA
TTTGCTTATC AATGCGCCCG GATTGGTGCT GATGAATTTG CCGTTTTACT GCATCCTTGT
ACCGGAAATG CCGACTTTTT TATCCGTAAC TTGTGGAATG ACTTGACCAA ATTAGTACAA
GAGAATGATC CGACCAAACG TTTGAGTGTC GCGATGGGCG TTGTGACCTG CCAAACCCAA
GACTTCACTG AGAGCAGCTC AAAATTACGA GCGAGCAGTT TATTAAACAA TGCGGATTTA
GCGCTCAATA TCGCCAAAAA AGCACCTGAA GGTCAGGTGG TGTACTATAC GCGCGACATT
GAAAGTGCTT ACAACAAGAA GCGTATCCTC GCTGAGCAGC TACAGCAGTT GCTGTTAGAC
CCAAACCAAT CGAGCTTGTA TTTATCCTAT CAACCTATCT TGTCGCGCGA TCCTGACCGA
CTAGGATGTG AGGCGCTGAT CCGTTGGCAG CACAGTGAGT TTGGTTATAT CAATCCGCAA
TATCTGATCG AGATTGCCGA AGAGTATGGA CTTGGTAAAA AGCTCGGGGC ATGGATCATG
CAGCAGGTCT ATTTGGCACT ACAAAATGAT TGGAAACCTC ACAACCGCCG ATTAGATGTC
TCGATCAACC TTTCCAACTC TCTGTTTGAT GAAACCTTGC CAACACTCGT TACCACGATT
TTTGGCCATC ATGAGAATTT CCTCAATGCG ATCATATTAG AACTAACTGA AACCATGACC
ATTGATGATT TTCCGCAAAG TCTCGCCATC ATCGAGTCAC TAGAAAAAAT GAAAGTTCGC
TTTGCACTCG ATGATTTCGG AACCGGATGG TCTTCGCTCT ACCAACTCAA CCACCTTAAA
TTCAGTAAAT TGAAGATAGA TAAATCCTTT GTCGACAATA TGAATCAAAA CCAGCAACAA
GCGATTTTTA TTGCTTCCAT CGTTAATCTC TCCCATCAAC TGGGGATGCA GGTGGTGGCC
GAGGGAATCG AACAGTTGGC GCAATTAGAG CAGCTCAAAC AATTGGGGGT AGATGAATTT
CAAGGCTACT ATTTCTCTCG TCCTATCACT AAAACCGAGT TCGCCACTTT TTGCGATCAC
TACTTTTCCT CAGAGAATAC CTCGTTATCC ACGCAAATTA ATGAGTAA
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| Protein sequence | MADQQYRNHH SLTTMKKSLL AFFTLVFVMV LLSIWAMVRF TNTYNMLTKY TQLAAWSLAQ
LEVETLNFTH RLETYLLNGS RENHQAMSLN YDILWNRFDL FLTSKETQEL RQQHDAQAII
QEVFTQLKRY ELAVSRGDQP VLQELLQLLE PYNAQIRNLA IVNFTGESAN SNIRMINENK
QQLLYFFAAI LLMLILLSYM TYRSADYQQF LAWHDPLTRL KNRNFIVKKL KKRRRNQQEP
IALILFDLNR FKELNDTMGY AFGDQLLINI AELLTQRCRS FAYQCARIGA DEFAVLLHPC
TGNADFFIRN LWNDLTKLVQ ENDPTKRLSV AMGVVTCQTQ DFTESSSKLR ASSLLNNADL
ALNIAKKAPE GQVVYYTRDI ESAYNKKRIL AEQLQQLLLD PNQSSLYLSY QPILSRDPDR
LGCEALIRWQ HSEFGYINPQ YLIEIAEEYG LGKKLGAWIM QQVYLALQND WKPHNRRLDV
SINLSNSLFD ETLPTLVTTI FGHHENFLNA IILELTETMT IDDFPQSLAI IESLEKMKVR
FALDDFGTGW SSLYQLNHLK FSKLKIDKSF VDNMNQNQQQ AIFIASIVNL SHQLGMQVVA
EGIEQLAQLE QLKQLGVDEF QGYYFSRPIT KTEFATFCDH YFSSENTSLS TQINE
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