| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1515 |
|---|
| Symbol | dctB |
|---|
| ID | 5137773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1628844 |
|---|
| End bp | 1630637 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640532973 |
|---|
| Product | C4-dicarboxylate transport sensor protein |
|---|
| Protein accession | YP_001217458 |
|---|
| Protein GI | 147675602 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0225348 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCCA TTCGTCGTCT CAGCTTGATG TTGTGGGTCA TGTTTATTGT GCTGGTGAGC
ATGAGCACGC ACTTATACTG GCGTTTCCAG TATCAAGCGC TGCTCAATGA GCATCAGTCG
CAGCTTGATC GTTTTTCAAG CCATATCGTT GCGACTTTAG ATAAATACGC CCACATTCCC
CATCTGATTT CTAAAGATAA AGAGTTGGTG GATGCACTGC TCTCGGCACA AAATTCGGCG
CAAATCGACA TCACCAATCG CTATTTAGAG CAAGTCAATG AAGTCATCCA AGCCGCAGAT
ACCTATTTGA TCGACCGCTT TGGCAACACG ATCGCATCCA GTAACTGGAA TTTGGATCGC
TCTTTTATCG GACGCAACTT TGCATGGCGA CCTTATTTTT ACCTCTCCAT TGCGGGTCAA
AAAAGCCAAT ATTTTGCGCT GGGGTCAACC TCAGGACAAC GCGGCTACTA TTACGCTTAT
CCAGTGATTT ATGCGGCGGA AATCTTAGGG GTTATCGTGG TCAAAATGGA TTTGTCGGCC
ATTGAGCAGG GCTGGCAAAG CAAGAGCAGC TATTTTGTGG CGACTGATGA TCATCAAGTG
GTGTTTATGT CGAGCCAACC TGCTTGGCTG TTTCATAGCG TTGCAGATTT ATTTCCCGCA
CAGCTCAACG ACATTCGCCA AAGCCAGCAA TATTTAGACA GCCCTATTCC TTCCCTCGGC
TGGCAGGGCG ACTTGCAAGC GGAGCAAAGC GAATGGCGCA AGCCTGAAAA ACATTGGCTG
CAAGATGACT ACATTGTTTC GAGTCGCCCG CTTCCTGAAC TTGCCCTGAC CATTCGCGTG
CTTTCACCGA AAATCGAACT CTTTTGGTCG GCGTTTGGCT TAGTGATTAT TCTCTGCATG
TTGTTTGCGA TTGTGTATTT GGGTTTTCAA CTGTGGCATC ACCGGCAGCT GCGTCAGCGG
CAAATCGAGC AACTGCAGCA AGAGACCAAG CAGAAGCTTG AATTTGAGGT GATGGAGCGC
ACCGCCAAAT TGCATGCGGA AATTGCTGAA CGGATCAAAA CCGAGCACGC GCTGCGCCAA
ACACAAGATG AGCTGATCCA AGCGGCGAAA CTGGCAGTGC TCGGCCAAAT GTCGGCCAGT
ATTAGCCACG AGCTGAACAA TCCGCTGGCG GCGATCCGCA GTTTTGCCGA TAACGGCCGC
CGTTTCCTTG CCACCAACAA GCCTGAACGC GCTGAAGAAA ATCTCTCGCG TATTTCCGCA
CTGACGGAGC GCATGGCGAA AATCAGTGAG CAGCTTAAAT CTTTCGCCCG AAAATCCACT
TCCAATGAGC AGCAAGACGT GCAGTTGTAC CCGTTGATTT TGTCGGCCAA AGAGTTGATG
ACTGGGCAAT TTAAAGCGCA GATGACTTTG TTAGAGCTGT GCGACCTCGA AACGCCCGTT
TGGGTACGCG TCAATCCCAT CCAGTTAGAA CAAGTGCTGA TTAATCTGCT CACCAATGCG
CTGCAAGCGT TAGAGGGACA AGCGGAGCGC GTGGTTCAAA TTCGTCTGCA AACCTCTGAA
CAGCAAATAG CCCTTTTCGT TGATGATAAT GGCCCCAGTG TTGGCATTGA AACCTTGCCC
CATCTGTTTG AACCCTTCCA CACCACGAAA AAGAATGGTT TAGGGCTTGG ACTTTCTATC
TCACAACAAA TTTTGCACAG CATGCAGGGA ACATTGAGCG TGGCGACTTC ACCACTAGGT
GGAGCGCGCT TTACCATCAC CCTGCCTCGT TTCACACCTC TCAATATGGA CTAA
|
|---|
| Protein sequence | MPSIRRLSLM LWVMFIVLVS MSTHLYWRFQ YQALLNEHQS QLDRFSSHIV ATLDKYAHIP
HLISKDKELV DALLSAQNSA QIDITNRYLE QVNEVIQAAD TYLIDRFGNT IASSNWNLDR
SFIGRNFAWR PYFYLSIAGQ KSQYFALGST SGQRGYYYAY PVIYAAEILG VIVVKMDLSA
IEQGWQSKSS YFVATDDHQV VFMSSQPAWL FHSVADLFPA QLNDIRQSQQ YLDSPIPSLG
WQGDLQAEQS EWRKPEKHWL QDDYIVSSRP LPELALTIRV LSPKIELFWS AFGLVIILCM
LFAIVYLGFQ LWHHRQLRQR QIEQLQQETK QKLEFEVMER TAKLHAEIAE RIKTEHALRQ
TQDELIQAAK LAVLGQMSAS ISHELNNPLA AIRSFADNGR RFLATNKPER AEENLSRISA
LTERMAKISE QLKSFARKST SNEQQDVQLY PLILSAKELM TGQFKAQMTL LELCDLETPV
WVRVNPIQLE QVLINLLTNA LQALEGQAER VVQIRLQTSE QQIALFVDDN GPSVGIETLP
HLFEPFHTTK KNGLGLGLSI SQQILHSMQG TLSVATSPLG GARFTITLPR FTPLNMD
|
|---|
| |