Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1505 |
Symbol | rpsA |
ID | 5135796 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1616916 |
End bp | 1618586 |
Gene Length | 1671 bp |
Protein Length | 556 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640532963 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_001217448 |
Protein GI | 147673739 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000000000598437 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGAAT CTTTTGCTCA ACTCTTTGAA GAGTTTCTGA ACGAGACCCA ATTCCAACAA GGTACTATCG TTAAAGGTAC TGTAGTAGCA ATCGAGAACG GCTACGTTCT GGTTGATGCT GGCCTGAAGT CTGAGTCTGC TATCCCTGCT GAACAATTCA AGAACGCTGC TGGCGAACTA GAAGTTCAAG TAGGTTCTCA AGTAGACGTA GCTCTGGACG CGGTTGAAGA TGGTTTCGGC GAAACTCAAC TTTCTCGTGA GAAAGCGAAG CGCCATGAAG CTTGGATCGT ACTTGAAAAA GCTTACGAAG AAGCTGCAAC TGTTATCGGT ATCATTAACG GTAAAGTTAA AGGCGGTTTC ACTGTTGAAC TGAACGGTAT CCGTGCGTTC CTGCCAGGTT CTCTGGTTGA CGTACGTCCA ATCCGTGACA CTGCTCACCT AGAAAACAAA GAGCTAGAGT TCAAAGTTAT CAAGCTAGAC CAGAAGCGTA ACAACGTTGT TGTTTCTCGT CGTGCAGTTA TCGAATCTGA AAGCAGCGTA GAGCGTGATG AACTGCTTGA AACTCTGCAA GAAGGTACTG AAGTTAAAGG TATCGTTAAG AACCTGACTG ACTACGGTGC GTTCGTTGAT CTGGGCGGCG TTGACGGTCT GCTACACATC ACTGACATGG CTTGGAAGCG CGTTAAGCAT CCATCAGAAA TCGTTAACGT TGGTGACGAG ATCCTAGTTA AAGTACTGAA GTTCGATCGT GATCGTACTC GCGTATCTCT AGGTCTGAAA CAGCTAGGCG AAGATCCATG GGTAGCAATC GCTAAGCGTT ACCCAGAAGG TCACAAACTG TCTGGCCGTG TAACTAACCT GACTGACTAC GGCTGCTTCG TTGAAATCGA AGAAGGCGTT GAAGGTCTAG TACACGTTTC TGAAATGGAC TGGACGAACA AGAACATCCA CCCATCTAAA GTTGTTAATG TTGGCGACGA AGTTGAGGTT ATGGTTCTGG ATATCGACGA AGAGCGTCGT CGTATCTCTC TAGGCCTGAA ACAGTGTAAA GCTAACCCAT GGCAATCATT CGCTGAAGCG CAAGCTAAAG GCGACAAAGT AACTGGTAAG ATCAAGTCTA TCACTGACTT TGGTATCTTC ATCGGTCTAG AAGGCGGTAT CGACGGTCTG GTTCACCTGT CTGACATCTC TTGGAACGTA CCAGGAGAAG AAGCTGTTCG TGAATTCAAG AAAGGCGACG AAATCTCTGC AGTTGTTCTA GCAGTAGACG CTGAGCGTGA GCGTATTTCT CTGGGCATCA AGCAAATGGA AAACGATCCA TTCAACGCTT ATGTTTCAGA CAACAAGAAA GGTGCTCTGG TTAACGGTAC TGTAACTGCA GTTGACGCGA AAGGCGCAAC CATCGAGCTA GAAGACGGCG TTGAAGGTTA CATCCGCGCT TCTGAAGTAT CACGTGACCG TATCGAAGAT GCATCACTGA TCCTGAACGT TGGTGACAAA GTTGAAGCGA AATTTACTGG TGTTGACCGT AAAAACCGCG TAATCAACCT GTCTATCAAA GCGAAAGATG AAGCTGAAGA GCAAGAAGTA ATGGCAACTC TGAACAAGCA AGATGAAGCT GCGTTCGGTA ATGCTATGGC TGACGCTTTC AAAGCAGCGA AAGGCGAATA A
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Protein sequence | MTESFAQLFE EFLNETQFQQ GTIVKGTVVA IENGYVLVDA GLKSESAIPA EQFKNAAGEL EVQVGSQVDV ALDAVEDGFG ETQLSREKAK RHEAWIVLEK AYEEAATVIG IINGKVKGGF TVELNGIRAF LPGSLVDVRP IRDTAHLENK ELEFKVIKLD QKRNNVVVSR RAVIESESSV ERDELLETLQ EGTEVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE ILVKVLKFDR DRTRVSLGLK QLGEDPWVAI AKRYPEGHKL SGRVTNLTDY GCFVEIEEGV EGLVHVSEMD WTNKNIHPSK VVNVGDEVEV MVLDIDEERR RISLGLKQCK ANPWQSFAEA QAKGDKVTGK IKSITDFGIF IGLEGGIDGL VHLSDISWNV PGEEAVREFK KGDEISAVVL AVDAERERIS LGIKQMENDP FNAYVSDNKK GALVNGTVTA VDAKGATIEL EDGVEGYIRA SEVSRDRIED ASLILNVGDK VEAKFTGVDR KNRVINLSIK AKDEAEEQEV MATLNKQDEA AFGNAMADAF KAAKGE
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