| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1491 |
|---|
| Symbol | nhaB |
|---|
| ID | 5136113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1602654 |
|---|
| End bp | 1604246 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640532949 |
|---|
| Product | sodium/proton antiporter |
|---|
| Protein accession | YP_001217434 |
|---|
| Protein GI | 147674405 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3067] Na+/H+ antiporter |
|---|
| TIGRFAM ID | [TIGR00774] Na+/H+ antiporter NhaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.796113 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATGT CCCTCGGAAA CGCGTTTATC AAGAATTTCC TTGGTAAAGC GCCTGATTGG
TACAAAGTTG CCATCATTGC TTTTCTTATT ATTAACCCAA TAGTGTTCTT CTTTATTAAT
CCCTTCCTCG CGGGTTGGTT ATTAGTGGTT GAGTTTATTT TTACTCTGGC CATGGCACTG
AAATGCTACC CTCTACAACC GGGTGGTTTA CTTGCGATTG AAGCGATTGC GATTGGGATG
ACAAGTCCGG GGCAAGTTAA GCATGAACTG GTTGCCAATA TCGAGGTATT GCTACTGTTG
GTGTTTATGG TGGCAGGCAT CTATTTTATG AAGCAACTGC TGCTGTTTAT TTTCACTAAA
ATTCTGCTTG GCATTCGCTC CAAAGTTCTC CTTTCGATAG CCTTTAGTGT TACGGCAGCG
TTTCTCTCTG CCTTCCTAGA TGCGCTGACA GTGATTGCGG TCATCATCAG TGTGGCGGTG
GGTTTCTACT CGATTTATCA CAAGGTTGCT TCGGGTCAAA GTGTTCACTC TTCTCACGAT
CACACCCATG ATGAAGGTAT TTCAGAATTA ACTCGTGATG ACTTAGAAAA CTATCGTGCA
TTTTTACGTT CACTGCTGAT GCACGCAGGT GTGGGTACAG CACTGGGTGG TGTCACCACT
ATGGTCGGTG AACCACAAAA CCTGATCATT GCTGACCAAG CAGGCTGGCA ATTTGGTGAG
TTCCTACTCC GCATGGCCCC CGTTACCGTA CCCGTGTTTA TTGCAGGTAT GCTGACCTGT
ATGTTGGTTG AGAAATTCCG CATTTTTGGC TACGGAGCTC GTCTTCCTGC CAATGTTCGT
CAAATTCTGC TCGATTTTGA CTCAGAAGAG CGCAAAAACC GCACAAACCA AGACGTTGCC
AAACTCTGGG TGCAAGGTGC TATCGCGGTT TGGTTGATTG TGGGCTTAGC TCTTCACTTA
GCCGCCGTTG GTCTTATTGG TTTGTCGGTG ATTATTCTCG CCACAGCTTT TACTGGTGTG
ATTGAAGAAC ATTCGCTAGG TAAAGCGTTT GAAGAAGCGC TACCGTTTAC CGCATTGCTG
GCGGTTTTCT TCTCGATTGT TGCAGTTATT ATCGACCAAG AGCTGTTCAA ACCCGTGATT
GATGCGGTAC TAAATGTCGA AGACCATGGC ACTCAGCTCG CACTCTTCTA TGTGGCGAAT
GGTCTACTTT CCATGGTGTC AGACAACGTG TTTGTGGGGA CGGTTTACAT CACTGAAGTA
AAAACCGCAC TGATGGAAGG CATGATTTCA CGTGACCAAT TTGATTTGTT GGCCGTCGCC
ATCAATACCG GCACCAACTT ACCTTCAGTA GCCACACCGA ACGGTCAAGC GGCCTTCTTA
TTCTTGCTCA CTTCGGCTTT GGCGCCACTA ATCCGTCTCT CTTACGGTCG TATGGTCATC
ATGGCGTTTC CTTATACGCT GGCGCTTTCA CTGGTTGGTT TTATTGGCAT CATGTTCTTA
CTTGAGCCAA TGACTGAAGT GTTCTATAGC CTAGGTTGGA TCAGCCATCA TGTCGCGCCA
GCTGCAGATG CACTACTGCA AAGTGGCCAC TAA
|
|---|
| Protein sequence | MPMSLGNAFI KNFLGKAPDW YKVAIIAFLI INPIVFFFIN PFLAGWLLVV EFIFTLAMAL
KCYPLQPGGL LAIEAIAIGM TSPGQVKHEL VANIEVLLLL VFMVAGIYFM KQLLLFIFTK
ILLGIRSKVL LSIAFSVTAA FLSAFLDALT VIAVIISVAV GFYSIYHKVA SGQSVHSSHD
HTHDEGISEL TRDDLENYRA FLRSLLMHAG VGTALGGVTT MVGEPQNLII ADQAGWQFGE
FLLRMAPVTV PVFIAGMLTC MLVEKFRIFG YGARLPANVR QILLDFDSEE RKNRTNQDVA
KLWVQGAIAV WLIVGLALHL AAVGLIGLSV IILATAFTGV IEEHSLGKAF EEALPFTALL
AVFFSIVAVI IDQELFKPVI DAVLNVEDHG TQLALFYVAN GLLSMVSDNV FVGTVYITEV
KTALMEGMIS RDQFDLLAVA INTGTNLPSV ATPNGQAAFL FLLTSALAPL IRLSYGRMVI
MAFPYTLALS LVGFIGIMFL LEPMTEVFYS LGWISHHVAP AADALLQSGH
|
|---|
| |