| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1476 |
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| Symbol | mfd |
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| ID | 5137679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1583545 |
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| End bp | 1587012 |
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| Gene Length | 3468 bp |
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| Protein Length | 1155 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640532934 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001217419 |
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| Protein GI | 147674778 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0179996 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTACAC ACTCTTTACT CTCTCTGTTT TCGGCGCAAG GTGCCGGAGA CAAAAAAGCC
ATCGGTAATT TACACGGCGC AAGTTTAGCG CTGGCCATTG CGGAACTCGC CAATGCTCAT
ACGAGCCATA CGTTGCTCGC CGTGCCCGAT CCACAAACCG CGCTCAAATT GCTACACGAA
GTGGAACAGT TTAGCCACAG CGAAGTGGCG CTCTTCCCCG ATTGGGAAAC GCTGCCCTAC
GATAATTTTT CACCCCATCA GGACATCATT TCTGATCGTA TTTCGCGTTT GTATCAGCTC
CCAAGCTTAA CGCGCGGTAT CACGATTGTC CCGGTCAGTA CCTTGCTTCA GCGCCAGTCA
CCACGTGACT TTTTGTTGCA GCACACCTTA ATTGTTAAAC GTGGCGATCA CTTTTCACTG
GATAAACTGC GCTTGCAGTT AGAAAACAGC AGCTATCGCC ATGTCGATCA GGTCTTTGGC
CCCGGTGAAT ACGCCAGTCG CGGGTCGATT CTTGATCTCT TCCCTATGGG CAGTAGCGAC
CCATTCCGGA TCGATTTCTT TGATGATGAA ATCGACACCA TTCGCACCTT TGATCCAGAC
AATCAGCGCT CAATCGCTGA AATGGATGAA ATTCGCCTGC TGCCCGCCCA TGAGTTTCCG
ACGACGGCCG CGGCGATCGA AGAGTTTCGT AACCGCTGGC GACAGCGTTT TGAAGCGCGC
CGCGAGCCGG AATCGGTTTA CAGCCAAGTC TCTAAAGGCA CTTGGCCGGC AGGGATTGAG
TATTGGCAGC CACTCTTTTT TGAGCACAGC GAGACTCTGT TTGATTACCT GCCCGCCAAC
AGCCAGCTTT TGGTGGTTGG CGAGCTGGAA AAAGCCATCG ACCAGTTCTT AACTGATGTC
GATTACCGCT ACGACCAACG CAATATCGAC CCACTGCGCC CACTGCTGCC GCCCAATGAG
TTGTGGCTGC GTAAAGATGA GCTGTTTGCC CACTTTAAAA CTCTGCCGCA AGTCCAACTG
ACAAGCTCAC CTATCGAGCT GCGTGCCGGT CGAATGAATG CGCAAGTTCA ACCACTACCC
GTATTGGCCG TTGAACATCA AAACAAAGAG CCTTTGGCGG CACTGCGCCA ATTTAGCGAA
CAATTTACCG GCAAAATCAT TTTCTCAGTC GAGTCGGAAG GTCGCCGTGA AGCGCTACTG
GAGTTGTTAC AGCGCATTAA ACTGCGCCCG CAAAGCCAAA ATGATTTCAG CCTTGCGTGC
CAACAAACGG AAAAATACTC ACTGGTGCTC GGCTCAGCAG AGCGCGGATT TATCTATGGT
GATAATCAAG TTGCCTTGAT TTGTGAGAGC GATTTACTGG GCGATCGGGT GATTCAACGT
CGCCGCAAAA AAGATCGCAA AAACGTCACC AACAGTGATG CGGTAATCCG CAACCTTGCC
GAGCTCAAAC CGGGGCAACC CGTTGTCCAT ATTGATCACG GGATCGGACG TTACTTAGGC
TTACAAACCC TTGAAGCGGG TGGCATGGTC AGCGAATACG TGATGCTGGA GTACCAAAAC
GAAGCCAAGC TGTATGTGCC GGTTTCGTCA CTGAACCTGA TCAGCCGCTA CTCCGGTGGC
GCAGAAGAAG CCGCCCAATT GCATAAATTA GGGGGTGAAG CGTGGGTCAA AGCGCGCCGC
AAAGCGGCGG AAAAAGTGCG CGATGTCGCG GCAGAACTTT TGGATGTGTA TGCCAAGCGT
GAAATCAAAC CGGGCTTTAA ATTTCATCTC GACCGTGAAC AATACGCGAC CTTCAAAGCC
ACCTTCCCGT TTGAAGAAAC CGATGACCAA GCAATGGCGA TCAACGCCGT GCTATCCGAC
ATGTGTCAAG CCAAAGCCAT GGATCGTTTG GTGTGTGGTG ACGTCGGCTT TGGAAAAACA
GAAGTAGCGA TGCGCGCCGC GTTTGTCGCG ACCGATAACG GCAAGCAAGT CGCCGTATTA
GTTCCAACTA CGCTGCTCGC CCAGCAGCAT TTTGAAAACT TCCGCGACCG CTTTGCTAAC
TTGCCGATCC GCGTCGAAGT GCTCTCCCGC TTTAAATCAG CCAAAGAGCA AAAACAAATC
CTACAAGACG TAGCGGACGG CAAAGTCGAC ATTCTGGTCG GTACCCATAA GTTGCTCTCT
AGCGAAATTC GTTTTGCGGA TCTTGGCTTG CTGATTGTTG ACGAAGAACA CCGTTTCGGA
GTGCGCCAAA AAGAAAAAGT CAAAGCGATG CGTGCCGATG TGGATATTCT GACTCTCACT
GCCACGCCAA TCCCACGTAC ACTCAACATG GCCATGAGTG GTATGCGTGA CCTGTCGATT
ATTGCCACAC CTCCAGCGCG CCGTTTAGCC ATCAAAACCT TTGTTCGTCA AAGTGAAGAT
AGTGTGATCC GTGAAGCGGT ACTGCGTGAA ATTATGCGCG GTGGTCAGGT GTACTTTCTG
CATAATCAGG TTGAAACCAT CGATAAAGTG GCCGCAGATT TAGAAAAACT GGTGCCTGAA
GCGCGGATTA CCGTCGCTCA CGGGCAGATG CGTGAACGTG AGCTGGAAAA AGTGATGAAC
GATTTCTACC ACCAGCGTTT CAATTTGCTG GTGTGTACCA CGATCATCGA AACCGGTATC
GACGTTCCGA CCGCGAATAC CATCATCATG GATCGCGCTG ACAGCTTAGG TTTAGCCCAG
TTGCACCAGT TACGTGGCCG CGTCGGTCGT TCGCATCACC AAGCCTATGC TTACCTGTTA
ACGCCACCGC CTAAAGCGAT TACCAAAGAT GCGGTCAAAC GCCTAGAGGC GATTGCCTCT
TTAGAAGATT TGGGGGCCGG CTTTACTCTC GCCACGCACG ACCTAGAAAT TCGCGGGGCC
GGTGAATTGT TAGGCGAAGA GCAAAGTGGC CAGATTCAGT CGGTCGGTTT TACTCTGTAT
ATGGAAATGC TCGAACAAGC GGTCGAAGCC CTAAAATCAG GCAAAGAACC TGCGCTGGAT
GATTTACTGC GTGAGCAGAC CGAAGTCGAA ATGCGCCTAC CAGCCTTGCT GCCGGAAGAG
TACATCCCCG ATATCAATAC GCGGTTATCC ATGTACAAAC AGATCGCCAG CGTAGCGAGT
AAAGACGAAT TGGCTGAACT CAAAGTCGAA TTGATTGATC GCTTTGGTAA ATTACCAGAC
GCCGCGTTAA ACTTACTCGC CATTGCTGAA CTGAAACTCA ATGCTATGCG CCTAAAAGTG
CGTAAAATTG AGGCGCATGA GCGTGGCGGA TACGTAGAGT TCTATCCCAA TGCTGACATT
AACCCGGTGT TTTTGGTTAA ACTGCTGCAA TCGCAACCAA AGTTACTGGC GATGGATGGG
CCAACCAAAT TGAAATTTAC CTTGCCTTTG GTTGAACGCA GTGCGCGCAT TCAATTTGTC
GCTGACATGT TGAAGAATTT CCAGCAAAAT GTACTACCTG CTCGGTAA
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| Protein sequence | MTTHSLLSLF SAQGAGDKKA IGNLHGASLA LAIAELANAH TSHTLLAVPD PQTALKLLHE
VEQFSHSEVA LFPDWETLPY DNFSPHQDII SDRISRLYQL PSLTRGITIV PVSTLLQRQS
PRDFLLQHTL IVKRGDHFSL DKLRLQLENS SYRHVDQVFG PGEYASRGSI LDLFPMGSSD
PFRIDFFDDE IDTIRTFDPD NQRSIAEMDE IRLLPAHEFP TTAAAIEEFR NRWRQRFEAR
REPESVYSQV SKGTWPAGIE YWQPLFFEHS ETLFDYLPAN SQLLVVGELE KAIDQFLTDV
DYRYDQRNID PLRPLLPPNE LWLRKDELFA HFKTLPQVQL TSSPIELRAG RMNAQVQPLP
VLAVEHQNKE PLAALRQFSE QFTGKIIFSV ESEGRREALL ELLQRIKLRP QSQNDFSLAC
QQTEKYSLVL GSAERGFIYG DNQVALICES DLLGDRVIQR RRKKDRKNVT NSDAVIRNLA
ELKPGQPVVH IDHGIGRYLG LQTLEAGGMV SEYVMLEYQN EAKLYVPVSS LNLISRYSGG
AEEAAQLHKL GGEAWVKARR KAAEKVRDVA AELLDVYAKR EIKPGFKFHL DREQYATFKA
TFPFEETDDQ AMAINAVLSD MCQAKAMDRL VCGDVGFGKT EVAMRAAFVA TDNGKQVAVL
VPTTLLAQQH FENFRDRFAN LPIRVEVLSR FKSAKEQKQI LQDVADGKVD ILVGTHKLLS
SEIRFADLGL LIVDEEHRFG VRQKEKVKAM RADVDILTLT ATPIPRTLNM AMSGMRDLSI
IATPPARRLA IKTFVRQSED SVIREAVLRE IMRGGQVYFL HNQVETIDKV AADLEKLVPE
ARITVAHGQM RERELEKVMN DFYHQRFNLL VCTTIIETGI DVPTANTIIM DRADSLGLAQ
LHQLRGRVGR SHHQAYAYLL TPPPKAITKD AVKRLEAIAS LEDLGAGFTL ATHDLEIRGA
GELLGEEQSG QIQSVGFTLY MEMLEQAVEA LKSGKEPALD DLLREQTEVE MRLPALLPEE
YIPDINTRLS MYKQIASVAS KDELAELKVE LIDRFGKLPD AALNLLAIAE LKLNAMRLKV
RKIEAHERGG YVEFYPNADI NPVFLVKLLQ SQPKLLAMDG PTKLKFTLPL VERSARIQFV
ADMLKNFQQN VLPAR
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