| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1469 |
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| Symbol | msbA |
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| ID | 5136485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1574983 |
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| End bp | 1576731 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640532927 |
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| Product | lipid transporter ATP-binding/permease protein |
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| Protein accession | YP_001217412 |
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| Protein GI | 147675578 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 49 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATTGC ACTCTGACGA ATCTAACTGG CAGACCTTTA AGCGTCTGTG GACTTATATC
CGCTTATACA AAGCGGGCTT GGTGGTTTCA ACTATAGCCT TAGTTATTAA TGCCGCTGCT
GATACTTATA TGATTTCTTT ACTAAAACCT TTATTGGATG AAGGTTTTGG TAATGCGGAA
TCCAACTTCC TGCGCATTCT GCCGTTTATG ATTTTAGGGC TTATGTTTGT GCGTGGTTTA
AGTGGATTTG CCTCTTCTTA CTGTTTGAGC TGGGTGTCCG GCAATGTGGT GATGCAGATG
CGTCGCCGTC TGTTTAACCA TTTTATGCAC ATGCCAGTTC GTTTTTTCGA CCAAGAGTCA
ACGGGCGGCT TATTATCGCG CATCACATAC GACTCAGAAC AAGTGGCTGG CGCAACCAGC
CGCGCGTTAG TCAGTATTGT GCGTGAAGGG GCGAGCATTA TTGGCTTGCT CACCTTGATG
TTTTGGAATA GCTGGCAGCT CTCTTTGGTA CTGATTGTCG TCGCACCAGT GGTGGCCTTT
GCGATTAGCT TTGTTTCTAA GCGTTTTCGT AAGATTTCGC GCAACATGCA AACGGCTATG
GGGCATGTGA CTTCATCGGC AGAGCAGATG CTCAAGGGCC ATAAAGTGGT ACTGAGCTAC
GGCGGTCAAG AGGTCGAACG CAAACGCTTT GACAAAGTCA GTAACAGCAT GCGCCAGCAA
ACCATGAAGC TGGTATCGGC ACAGTCGATT GCAGACCCAG TGATTCAAAT GATTGCCTCA
CTTGCTCTGT TTGCGGTGCT CTTTTTAGCC AGTGTCGATT CGATTCGCGC TGAGTTGACT
CCAGGTACAT TTACTGTGGT GTTTTCAGCC ATGTTTGGCC TAATGCGTCC TCTGAAAGCT
CTGACCAGTG TAACGTCGGA GTTTCAGCGT GGTATGGCCG CTTGCCAGAC CTTGTTTGGT
TTGATGGATC TCGAAACCGA GCGCGATAAT GGCAAATATG AGGCAGAGCG TGTCAACGGT
GAAGTGGATG TGAAAGACGT AACTTTCACC TACCAAGGCA AAGAAAAACC TGCGTTATCC
CATGTTTCGT TCTCGATTCC GCAAGGGAAA ACGGTCGCTC TGGTTGGCCG TTCTGGCTCA
GGTAAATCGA CCATCGCGAA TCTGTTTACT CGTTTCTATG ATGTCGACAG TGGATCGATC
TGTCTTGATG GGCACGATGT GCGTGATTAC AAGCTGACCA ATCTGCGTCG TCACTTTGCC
TTGGTTTCGC AAAACGTACA TCTGTTTAAC GACACCATCG CCAATAACAT CGCTTACGCT
GCCGAAGGTG AATACACCCG CGAGCAGATT GAGCAAGCCG CACGTCAAGC CCATGCGATG
GAGTTTATTG AAAACATGCC GCAAGGTTTG GATACCGTGA TCGGTGAGAA TGGCACCAGT
TTATCTGGCG GTCAGCGTCA GCGAGTGGCG ATTGCTCGCG CATTGCTGCG CGATGCACCT
GTGCTGATCC TCGATGAAGC GACGTCGGCA CTGGATACTG AATCGGAGCG TGCCATTCAA
GCGGCGTTAG ATGAGCTGCA GAAAAACAAA ACCGTGCTGG TGATTGCGCA CCGTTTATCT
ACCATCGAAC AAGCAGATGA AATTCTTGTG GTTGATGAAG GTGAAATCAT TGAGCGTGGT
CGCCATGCTG ATCTGTTGGC GCAAGATGGC GCATACGCTC AGCTGCATCG CATCCAGTTT
GGTGAATAG
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| Protein sequence | MSLHSDESNW QTFKRLWTYI RLYKAGLVVS TIALVINAAA DTYMISLLKP LLDEGFGNAE
SNFLRILPFM ILGLMFVRGL SGFASSYCLS WVSGNVVMQM RRRLFNHFMH MPVRFFDQES
TGGLLSRITY DSEQVAGATS RALVSIVREG ASIIGLLTLM FWNSWQLSLV LIVVAPVVAF
AISFVSKRFR KISRNMQTAM GHVTSSAEQM LKGHKVVLSY GGQEVERKRF DKVSNSMRQQ
TMKLVSAQSI ADPVIQMIAS LALFAVLFLA SVDSIRAELT PGTFTVVFSA MFGLMRPLKA
LTSVTSEFQR GMAACQTLFG LMDLETERDN GKYEAERVNG EVDVKDVTFT YQGKEKPALS
HVSFSIPQGK TVALVGRSGS GKSTIANLFT RFYDVDSGSI CLDGHDVRDY KLTNLRRHFA
LVSQNVHLFN DTIANNIAYA AEGEYTREQI EQAARQAHAM EFIENMPQGL DTVIGENGTS
LSGGQRQRVA IARALLRDAP VLILDEATSA LDTESERAIQ AALDELQKNK TVLVIAHRLS
TIEQADEILV VDEGEIIERG RHADLLAQDG AYAQLHRIQF GE
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