Gene VC0395_A1459 details

Gene Information

• Locus tag: VC0395_A1459
• ID: 5136465
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 1563514
• End bp: 1565394
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640532917
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_001217402
• Protein GI: 147673779
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 52
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATGTAA CGCAACTTTC ACAAAAGCAA AAAATCACCT TATTTATCCT TGTACTTTGC 
TTGGGCTTCA TCGGGTTAGC GGTTTTTACC GCGCAAAGTT TATCTAAGAT GAACTCGCAG 
TATCAACAAA GTGGCGATGT GACCGCGGGC TCTGCGGCTT TATTTGCGAC TCAAGCACAG 
CTGTTTGAGT TAGCCGCTGA GCGTGAACAT CTCTCGTCAA ACAAGGTGTC TGAGATTAAA 
ACGCGCTTGG CTCAGCTAAT GCAGAAAGTG GAAGGGGATA AGCGCTTTCT TGCCGAGAAT 
AACTTTGCTA ATGAAGGTAA CGCTTTACAG CAAGCGGTGC AGGCTTTTAA CGACGATATG 
CAGCCGTGGC TTGAGATTAA AGGCGAGCTT GGTTTTAACG TCGATGATGG CAAGTTGGCC 
GAGCTGAAAA AACTGGCGGT GACTATAGAA AAGAAAATTG ATGAAACCGG TATGGTAACC 
ATCAATTCCG ATTTTCAAGC TATGATCAAA GCCCAGCAAA ATTACTTACT ACAACCGAAT 
GAACAAAATT TGCGCTTATT TAATCGGGCG TTAGCGGGTT TTGTCAGCAT GTCGCAATCC 
TATGCCATGC TCGATCTGTA TAAAGCGGAA ATTGAGCAGT TTAAAACCAC TTTTTTGCGA 
GTCAGTGAGC TGTCGCAGCA AGTCAAAGAT ATCGAAAAAA ACTTACTCAG TAGTGAAGCA 
ACAGCGCAAG GTGTGATTGA ATCAAGCGCG CAGCGTCTAG AAGAGGTGAG TAGTCGTTAT 
CAATCGTTAG CTGAGAAAGC GGGCGAGCAA ACCTTGCTCT CTATTTTAGT CGCTTGCGTG 
ATTCTGGCAG TGTTGACCGT ATTGCTGTTT ATGATGGTGA GTTTCTCGCT ATCTAAAGCG 
TTAACACAGA TAGGCCGCGT ATTAGAAAAG CTCTCTTCTG GCGATCTCTC TCAGCGCTTA 
GCTCTGATAT CCAATAAAAA AGATGAGTTT AATCAGTTAG CGTTTGCGGT GAACAAGAGT 
TGTGAAAACC TCGGCGGCCT AGTGCATGTC GTGCAAGATC GTAGTGTGGC ATTGTCAGGG 
GATGCTGTGG CGCTCAATCA AGCGATTGAT AATCTGGTAC GCGGTCAGTC TGATGTGATG 
GATCAAACCC AAAGGCTCGC GTCAGCAACC GAAGAGGTCA GTTTAACCAC GCAGCAAGTC 
TCTCATTCTC TCGAAGTGGT CGCCAATGTG AGTAAAGCCT CGACTTTAGC GGCTGCGGAA 
GGCAGTAAAG TTATTAGTGC TGCGATTGGC TCTTTGCGTG AGGTCGGGAG TATTTTGCAG 
TCAGCCGCCA GCCATATTCA GCAGCTAGAA CAAGCTTCCG CCAAAGTCGA CTCAGTGATG 
GACATCATTA ACGGTATCGC AGAGCAAACG AATTTATTGG CACTCAATGC GGCGATTGAA 
GCTGCTCGTG CGGGTGAGCA AGGACGCGGA TTTGCGGTTG TCGCCGATGA GGTGCGTAGT 
TTAGCCGTCA GAACGGTGAA TGCGGTGAGC GAAATTTCCG GCACGATAGA AACTATGAAA 
AAAGAGAGTG CGGAAGTGAT TTTGTTTATG AACCAATCCG AGCAGACCAT GGAAGAGGGG 
CAAAGCAAAG GCAATCAAGC CATGCAAGCG TTACAGCGAA TTACCCAAGG GACGGATGAA 
GCCGCATCGC AAACGGAAAG AATTTTTTCG TCGATAAAAG AGCTGTCCGC AACCAGCCAA 
GCAATGGCCG AAAGCATGAG CCAAATTTCG AGTGCGATGC AAGCGTTGGA GTCGTATAAC 
ACTCAACTGC GTGTGACCAG CCGTGAAGTT GAGACACGCG CAGAGAGTTT AGAGCATGAT 
TGCCGATGCT TTACGTTGTA G 

 

Protein sequence

MDVTQLSQKQ KITLFILVLC LGFIGLAVFT AQSLSKMNSQ YQQSGDVTAG SAALFATQAQ 
LFELAAEREH LSSNKVSEIK TRLAQLMQKV EGDKRFLAEN NFANEGNALQ QAVQAFNDDM 
QPWLEIKGEL GFNVDDGKLA ELKKLAVTIE KKIDETGMVT INSDFQAMIK AQQNYLLQPN 
EQNLRLFNRA LAGFVSMSQS YAMLDLYKAE IEQFKTTFLR VSELSQQVKD IEKNLLSSEA 
TAQGVIESSA QRLEEVSSRY QSLAEKAGEQ TLLSILVACV ILAVLTVLLF MMVSFSLSKA 
LTQIGRVLEK LSSGDLSQRL ALISNKKDEF NQLAFAVNKS CENLGGLVHV VQDRSVALSG 
DAVALNQAID NLVRGQSDVM DQTQRLASAT EEVSLTTQQV SHSLEVVANV SKASTLAAAE 
GSKVISAAIG SLREVGSILQ SAASHIQQLE QASAKVDSVM DIINGIAEQT NLLALNAAIE 
AARAGEQGRG FAVVADEVRS LAVRTVNAVS EISGTIETMK KESAEVILFM NQSEQTMEEG 
QSKGNQAMQA LQRITQGTDE AASQTERIFS SIKELSATSQ AMAESMSQIS SAMQALESYN 
TQLRVTSREV ETRAESLEHD CRCFTL