| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1447 |
|---|
| Symbol | |
|---|
| ID | 5136195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1549486 |
|---|
| End bp | 1550265 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640532905 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001217390 |
|---|
| Protein GI | 147673887 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0730] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000000115265 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATGGAAT GGATAGAACC CACCACGATA ATGGTGCTGG CTCTTGTTGC TTTTATTGCC
GGATTTATCG ATGCGGTCGC AGGCGGCGGC GGAATGTTGA CCGTACCAGC GCTACTTTCG
CTAGGTTTAC CGCCTCATTT GGCTTTGGGA ACCAATAAAT TAGCTGCGAC GTTTGCTTCA
TCAACCGCGG CATGGACTTA CTATCGTCAA AAACTCTTTG ATCCTGCATG TTGGAAACGC
GCTTTTATTG CAACCTTGAT TGGCGCCATA CTGGGCACTT TGGCCGTTGA TGCGATCAGC
ACGGATTGGC TACGTAAAGT ACTCCCGCTG ATTATTCTGG CTGCGGCTTT ATATACGGTT
TTACATCGCC CCCATCAAAC GGAACAAAGT GTCACGCCTG AACCATGCCC TAAATTGCAT
CGCAAGCAGA TCCTGCAAGG CATAGGGCTA GGATTTTATG ATGGCTTAGC GGGTCCTGGC
ACTGGCGCGT TCTGGACGGT CAGCTCAATG GCGTTGTATC GCTTCAATAT CCTGCTGGCT
TCGGGACTTG CCAAAGCTAT GAATTTAACC AGTAATTTCA CCTCACTGGT GACTTTTGCC
CTACTCGGTC ATATTGATTG GCTGTTGGGT TTGACGATGG GAGTCTGTTT GATGGCGGGA
GCGTACGTCG GAGCTCACTC AGCCATTCGC TTTGGAGCTC CGTTTATCCG TCCCCTATTT
ATTTTAGTGG TCACGATTTT GGCGGGGAAA TTGGCTTATG ACGCATGGTG GGTGGGATGA
|
|---|
| Protein sequence | MMEWIEPTTI MVLALVAFIA GFIDAVAGGG GMLTVPALLS LGLPPHLALG TNKLAATFAS
STAAWTYYRQ KLFDPACWKR AFIATLIGAI LGTLAVDAIS TDWLRKVLPL IILAAALYTV
LHRPHQTEQS VTPEPCPKLH RKQILQGIGL GFYDGLAGPG TGAFWTVSSM ALYRFNILLA
SGLAKAMNLT SNFTSLVTFA LLGHIDWLLG LTMGVCLMAG AYVGAHSAIR FGAPFIRPLF
ILVVTILAGK LAYDAWWVG
|
|---|
| |