Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1429 |
Symbol | tolB |
ID | 5135619 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1530223 |
End bp | 1531575 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640532887 |
Product | translocation protein TolB |
Protein accession | YP_001217372 |
Protein GI | 147674437 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000000000134537 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTTAAGC GATTAGTTTT TGTTTTGATG CTCATCGGTA CCGGTTTTTC CAATATTGCG AATGCAGCAT TGGAGCTAGT TATTACTGAC GGTATTGATT CTGCACGTCC GATTGCGATA GTTCCTTTCA AATGGGAAGG CGCAACCAAG TTGCCTGAAG ACGTTTCTGC GGTGATTGCC TCTGACTTAC AGCGCAGTGG TAAATTTAGC CCAGTTCCGA CCAGCAAAAT GCCACAGACG CCTTATAGCG AAGAGCAGGT TAACTTTGGC AAATGGACAT CTATGGGGGT CGATTCATTA TTGACGGGTA CGATCACGCA AAATGCGGAA GGTAGCTATG TAATTAGTTA TCAACTGGTT GACATTGTGC GTGGACAACT GACTCAAGGC CAAAGCAAAG CTCTGTCTCA AGATGGTCAA TTGGTGCTAT CTAAAGATCA TGTTTTGTTT AATAAAGTGG CGACCGTTCC TGCATCAAGA ATGCGTGAAT ATGCCCACCG TATTGCGGAC TTGGTTTATG AGGAATTGAC CGGTGAACGC GGCGCCTTCT TAACGCGCAT CGCTTACGTT GTGGTCAATG ATAAGGATCC GTATCCTTAT CAACTGAGAA TTGCTGATTA TGACGGCTAT AACGAACGTC TTGTACTTCG TTCTAAGCAG CCGCTTATGT CACCTGCTTG GTCACCTGAT GGTCAGACTT TGGCTTACGT GAGTTTCCAA AACGGACAAG CCGAAATTTA CATGATGAAC ATCTACAGTG GGAAGCGAGA GAAGCTGACG TCATTCCCAC GTCATAATGG TGCACCCAGA TTCTCACCAG ATGGTAAAAC GCTAGCGCTG GTTTTATCAA AAACTGGTAA TTTACAGGTC TACACGATGG ACTTGGCTAC ACGTCGCTTA ACAGAGGTGA CTAGTGGCCG TTCCAACAAC ACCGAACCTT TCTGGCATCC AGATGGTAAA TCTTTAATTT TCACTTCAGA TCGGGGTGGT AAACCACAGA TTTATCAAGT AAATTTATCC GGCGGTGAAA CCAAGCGTTT AACTTGGCAA GGTAGCCAAA ACTTGGGTGG CCAAATTACA CCGGATGGAA AATTCTTGGT GATGGTGAAT CGTAGTGATT CCGGCTTCAA TCTCGCGAAG CAGGATTTAG AAACAGGGGC AATGCAGATT CTGACAAAAA CCTTGTTAGA TGAGTCCCCA AGTATTGCGC CGAATGGTGG TATGGTGATT TATAGCTCCA TCTACAATAA GGCCAACGTC TTGTCGATGG TATCCATTGA TGGACGCTTT AAAGCAAGAT TACCGGCAAC CAATGGGCGC GTTCGTGCTC CAGCATGGTC ACCGTTTTTA TAA
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Protein sequence | MFKRLVFVLM LIGTGFSNIA NAALELVITD GIDSARPIAI VPFKWEGATK LPEDVSAVIA SDLQRSGKFS PVPTSKMPQT PYSEEQVNFG KWTSMGVDSL LTGTITQNAE GSYVISYQLV DIVRGQLTQG QSKALSQDGQ LVLSKDHVLF NKVATVPASR MREYAHRIAD LVYEELTGER GAFLTRIAYV VVNDKDPYPY QLRIADYDGY NERLVLRSKQ PLMSPAWSPD GQTLAYVSFQ NGQAEIYMMN IYSGKREKLT SFPRHNGAPR FSPDGKTLAL VLSKTGNLQV YTMDLATRRL TEVTSGRSNN TEPFWHPDGK SLIFTSDRGG KPQIYQVNLS GGETKRLTWQ GSQNLGGQIT PDGKFLVMVN RSDSGFNLAK QDLETGAMQI LTKTLLDESP SIAPNGGMVI YSSIYNKANV LSMVSIDGRF KARLPATNGR VRAPAWSPFL
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