Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1381 |
Symbol | nanH |
ID | 5137230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 1486334 |
End bp | 1488757 |
Gene Length | 2424 bp |
Protein Length | 807 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640532839 |
Product | neuraminidase |
Protein accession | YP_001217324 |
Protein GI | 147673281 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4409] Neuraminidase (sialidase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTCAATCA AGATGACTTC ACAACGAAGA AGAGCATCGA TTCACAAGGA AACAGATTCT AATATAAAGG GAGTAGATAT GCGTTTCAAA AACGTAAAGA AAACCGCTTT AATGCTTGCA ATGTTCGGTA TGGCGACAAG CTCAAACGCC GCACTTTTTG ACTATAACGC AACGGGTGAC ACTGAGTTTG ACAGTCCAGC CAAACAGGGA TGGATGCAAG ACAACACGAA TAATGGCAGC GGCGTTTTAA CCAATGCAGA TGGAATGCCC GCTTGGTTGG TGCAAGGTAT TGGAGGGAGA GCTCAATGGA CATATTCTCT CTCTACTAAT CAACATGCCC AAGCATCAAG TTTCGGTTGG CGAATGACGA CAGAAATGAA AGTGCTCAGT GGTGGAATGA TCACAAACTA CTACGCCAAC GGCACTCAGC GTGTCTTACC CATCATTTCA TTAGATAGCA GTGGTAACTT AGTTGTTGAG TTTGAAGGGC AAACTGGACG CACCGTTTTG GCAACCGGCA CAGCAGCAAC GGAATATCAT AAATTTGAAT TGGTATTCCT TCCTGGAAGT AACCCATCCG CTAGCTTTTA CTTCGATGGC AAACTCATTC GTGACAACAT CCAGCCGACT GCATCAAAAC AAAATATGAT CGTATGGGGG AATGGCTCAT CAAATACGGA TGGTGTCGCC GCTTATCGTG ATATTAAGTT TGAAATTCAA GGCGACGTCA TCTTCAGAGG CCCAGACCGT ATACCGTCCA TTGTAGCAAG TAGCGTAACA CCAGGGGTGG TAACCGCATT TGCAGAGAAA CGTGTGGGGG GAGGAGATCC CGGTGCTCTG AGTAATACCA ATGACATAAT CACTCGTACC TCACGAGATG GCGGTATAAC TTGGGATACC GAGCTCAACC TCACTGAGCA AATCAATGTC AGTGATGAGT TTGATTTCTC CGATCCTCGG CCTATCTATG ATCCTTCCTC CAATACGGTT CTTGTCTCTT ATGCTCGATG GCCGACCGAT GCCGCTCAAA ACGGAGATCG AATAAAACCA TGGATGCCAA ACGGTATTTT TTACAGCGTC TATGATGTTG CATCAGGGAA CTGGCAAGCG CCTATCGATG TTACCGATCA GGTGAAAGAA CGCAGTTTCC AAATCGCTGG TTGGGGTGGT TCAGAGCTGT ATCGCCGAAA TACCAGCCTA AATAGCCAGC AAGACTGGCA ATCAAACGCT AAGATCCGAA TTGTTGATGG TGCAGCGAAC CAGATACAAG TTGCCGATGG TAGCCGAAAA TATGTTGTCA CACTGAGTAT TGATGAATCA GGTGGTCTAG TCGCTAATCT AAACGGTGTT AGTGCTCCGA TTATCCTGCA ATCTGAACAC GCAAAGGTAC ACTCTTTCCA TGACTACGAA CTTCAATATT CGGCGTTAAA CCACACCACA ACGTTATTCG TGGATGGTCA GCAAATCACA ACTTGGGCTG GCGAAGTATC GCAGGAGAAC AACATTCAGT TTGGTAATGC GGATGCCCAA ATTGACGGCA GACTGCATGT GCAAAAAATT GTTCTCACAC AGCAAGGCCA TAACCTCGTG GAGTTTGATG CTTTCTATTT AGCACAGCAA ACCCCTGAAG TAGAGAAAGA CCTTGAAAAG CTTGGTTGGA CAAAAATTAA AACGGGCAAC ACCATGAGTT TGTATGGAAA TGCCAGTGTC AACCCAGGAC CGGGTCATGG CATCACCCTT ACTCGACAAC AAAATATCAG TGGCAGCCAA AACGGCCGCT TGATCTACCC AGCGATTGTG CTTGATCGTT TCTTCTTGAA CGTCATGTCT ATTTACAGTG ATGATGGCGG TTCAAACTGG CAAACCGGTT CAACACTCCC TATCCCCTTT CGCTGGAAGA GTTCGAGTAT CCTAGAAACT CTCGAACCTA GTGAAGCTGA TATGGTTGAA CTCCAAAACG GTGATCTACT CCTTACTGCA CGCCTTGATT TTAACCAAAT CGTTAATGGT GTGAACTATA GCCCACGCCA GCAATTTTTG AGTAAAGATG GTGGAATCAC GTGGAGCCTA CTTGAGGCTA ACAACGCTAA CGTCTTTAGC AATATCAGTA CTGGTACCGT TGATGCTTCT ATTACTCGGT TCGAGCAAAG TGACGGTAGC CATTTCTTAC TCTTTACTAA CCCACAAGGA AACCCTGCGG GGACAAATGG CAGGCAAAAT CTAGGCTTAT GGTTTAGCTT CGATGAAGGG GTGACATGGA AAGGACCAAT TCAACTTGTT AATGGTGCAT CGGCATATTC TGATATTTAT CAATTGGATT CGGAAAATGC GATTGTCATT GTTGAAACGG ATAATTCAAA TATGCGAATT CTTCGTATGC CTATCACATT GCTAAAACAG AAGCTGACCT TATCGCAAAA CTAA
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Protein sequence | MSIKMTSQRR RASIHKETDS NIKGVDMRFK NVKKTALMLA MFGMATSSNA ALFDYNATGD TEFDSPAKQG WMQDNTNNGS GVLTNADGMP AWLVQGIGGR AQWTYSLSTN QHAQASSFGW RMTTEMKVLS GGMITNYYAN GTQRVLPIIS LDSSGNLVVE FEGQTGRTVL ATGTAATEYH KFELVFLPGS NPSASFYFDG KLIRDNIQPT ASKQNMIVWG NGSSNTDGVA AYRDIKFEIQ GDVIFRGPDR IPSIVASSVT PGVVTAFAEK RVGGGDPGAL SNTNDIITRT SRDGGITWDT ELNLTEQINV SDEFDFSDPR PIYDPSSNTV LVSYARWPTD AAQNGDRIKP WMPNGIFYSV YDVASGNWQA PIDVTDQVKE RSFQIAGWGG SELYRRNTSL NSQQDWQSNA KIRIVDGAAN QIQVADGSRK YVVTLSIDES GGLVANLNGV SAPIILQSEH AKVHSFHDYE LQYSALNHTT TLFVDGQQIT TWAGEVSQEN NIQFGNADAQ IDGRLHVQKI VLTQQGHNLV EFDAFYLAQQ TPEVEKDLEK LGWTKIKTGN TMSLYGNASV NPGPGHGITL TRQQNISGSQ NGRLIYPAIV LDRFFLNVMS IYSDDGGSNW QTGSTLPIPF RWKSSSILET LEPSEADMVE LQNGDLLLTA RLDFNQIVNG VNYSPRQQFL SKDGGITWSL LEANNANVFS NISTGTVDAS ITRFEQSDGS HFLLFTNPQG NPAGTNGRQN LGLWFSFDEG VTWKGPIQLV NGASAYSDIY QLDSENAIVI VETDNSNMRI LRMPITLLKQ KLTLSQN
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