| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1375 |
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| Symbol | |
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| ID | 5137383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1480233 |
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| End bp | 1481516 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640532833 |
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| Product | hypothetical protein |
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| Protein accession | YP_001217318 |
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| Protein GI | 147675054 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTGGTT CAATTTTTGG TTGGTTAGGA TTGTTATTTG CGGGCATGCC AGTAGGTTTT
TCACTTATTT TTGTTGCATT AGCTTTCCTC ATTCTCACCA ATAGTACAGG GATTAATTTT
GCGGCTCAGC AAATGCTGGG TGGGATCGAC AACTTCACGT TGCTAGCCGT TCCATTTTTT
GTGTTAACTG GCCATCTAAT GAATAGTGCC GGTATTACAG AAAGAATCTT CAACTTCGCG
AAGTCTCTCG TTGGCCATAT TACGGGCAGC TTGGGTCATG TAAATATCAT GGCAAGCTTG
TTGTTCTCTG GAATGTCTGG CTCAGCATTG GCAGATGCAG GTGGGTTAGG TCAGCTTGAA
ATCAAATCCA TGCGTGATGC GAAGTATCAC GATGATTTCG CGGGCGGGCT GACAGCGGCA
TCTTGCATCA TTGGTCCTCT GGTGCCGCCA TCAGTACCAC TAGTCATATA CGGTGTGGTT
TCCAATACCT CTATTGGCGC ATTATTTTTA GCGGGTGCGA TACCTGGTTT GCTGTGTTGT
ATTGCCTTGA TGGTGATGAG TTATTTTATC TGCAAAAAGC GCGGATATAT GACATTGCCT
AAAGCGAGCA GACGTGAGCA ATTTAAATCA CTTAAAGAAG CATTTTTATC GTTGCTGACA
CCAGTCATTA TCATTGGTGG GATCTTCTCT GGTAAATTTA CGCCAACTGA AGCGGCTGCT
GTTTCATCTC TCTACGCACT ATTTTTAGGT ACAGTTGTTT ATAACACGCT CACGTTACAG
GGGTTCATCG AAATTCTGAA AGAAACGGTC AATACCACAG CCGTGGTTGC TCTGATGGTT
ATGGGCGTGA CTGTTTTTGG GTGGATTGTG GCTCGCGAAC AGTTACCACA GATGTTGGCT
GATTATTTCT TAACAATCAG TGATAACCCA CTCGTACTGC TTCTGTTGAT CAACTTGTTG
CTCCTCTTCT TGGGCACGTT TATTGAGTCA TTGGCCTTGC TGTTGCTGCT AGTTCCATTC
TTGGTGCCAG TGGCTTCAGC GGTGGGTATC GATCCTGTTC ACTTCGGTGT TATGGCGATT
CTTAACCTAA TGATTGGCAT TCTTACCCCA CCAATGGGAA TGGCTTTATA TGTGGTTTCT
CGAGTCGGAG ATATCCCATT CCATACGCTT ACGCGTGGTG TTTTACCACT ACTGGTGCCG
CTATTCATCG TGTTGGCGCT GGTGGCGGTA TTCCCTCAAT TTACTCTGCT ACTACCGGAA
TTATTCCTCG GATACGGACA GTAG
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| Protein sequence | MVGSIFGWLG LLFAGMPVGF SLIFVALAFL ILTNSTGINF AAQQMLGGID NFTLLAVPFF
VLTGHLMNSA GITERIFNFA KSLVGHITGS LGHVNIMASL LFSGMSGSAL ADAGGLGQLE
IKSMRDAKYH DDFAGGLTAA SCIIGPLVPP SVPLVIYGVV SNTSIGALFL AGAIPGLLCC
IALMVMSYFI CKKRGYMTLP KASRREQFKS LKEAFLSLLT PVIIIGGIFS GKFTPTEAAA
VSSLYALFLG TVVYNTLTLQ GFIEILKETV NTTAVVALMV MGVTVFGWIV AREQLPQMLA
DYFLTISDNP LVLLLLINLL LLFLGTFIES LALLLLLVPF LVPVASAVGI DPVHFGVMAI
LNLMIGILTP PMGMALYVVS RVGDIPFHTL TRGVLPLLVP LFIVLALVAV FPQFTLLLPE
LFLGYGQ
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