Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1367 |
Symbol | |
ID | 5135314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1466731 |
End bp | 1469112 |
Gene Length | 2382 bp |
Protein Length | 793 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640532825 |
Product | putative DNA methylase HsdM |
Protein accession | YP_001217310 |
Protein GI | 147674983 |
COG category | [V] Defense mechanisms |
COG ID | [COG0286] Type I restriction-modification system methyltransferase subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACCACT CAGTACATAA CAAACTCGTT TCATTTATTT GGTCGATTGC CGACGACTGT CTTCGTGATG TCTATGTTCG TGGTAAATAC CGCGACGTTA TCTTGCCTAT GGTGGTGCTA CGCCGTCTGG ATACGCTTTT GGAGCCATCA AAAGAAGCAG TACTGGAAGA AGTCAGATTC CAAAAAGAAG AGATGAATGA AATTGAGCTT GATGACGCAC CATTATGCGC TACATCAGGT TATGTGTTCT ACAACACGTC CAAGTGGACT CTGCAAACGC TATTCAGTAC AGCGACTAAC AACCAACAGA TTCTGCTGGC TAACTTCGAA GATTACCTCA ACGGTTTTAG CGAAAACGTA AAAGAGATTG TTGAGTGTTT TAACCTGAAA GCCCAAATCC GTCACATGGC AGGGAAAGAC GTTCTGCTAG ATGTGGTTGA GAAATTCGTC TCGCCGTACA TCAACTTAAC GCCAGCGGTT AAAGAAGATC CTGAGGGTAA CAAACTACCA GCACTCAGCA ACCTTGGTAT GGGCTATGTA TTTGAAGAAT TGATTCGTAA GTTCAACGAA GAGAACAACG AAGAGGCGGG GGAGCACTTT ACTCCGCGTG AAGTGATCGA GCTGATGACG CACCTTGTTT TCGATCCAAT CAAAGATAAC TTGCCACTTT CTATCACAGT GTATGACCCA GCATGTGGTA GTGGCGGTAT GCTGACAGAA ACGCAAAACT TTGTTGAAGA GAAATACCCA GCATCAAACC GTGATATCTA CCTTTACGGT AAAGAGATCA ACGATGAGAC TTACGCTATC TGTAAGTCAG ATATGATGAT CAAAGGTAAC AACCCAGAAA ACATCCGTGT AGGTTCAACC CTTTCCACTG ACGAATTCTC ATCTAATCGC TTCGATTTCA TGCTCTCTAA CCCGCCTTAT GGTAAGAGCT GGGCGAGTGA GCAAAAGCAC ATCAAAGAAG GCAAAGAAGT CGTTGATGGT CGCTTTAAAG TGAAGTTAAA AGATTACTGG GGTGTAGAGA GCGAGCAAGA AGCGATACCA CGCTCAAGTG ATGGCCAGTT ACTGTTCCTG ATGGAAATGG TCACCAAAAT GAAGTCGCCG CAAGACAGCC CATTGGGTTC ACGCATTGCG TCCGTTCACA ATGGTTCAAG CTTGTTTACC GGTGATGCGG GTAGTGGTGA AAGTAATATT CGTCGTTTCA TCATAGAAAA TGACATGCTG GATGCGATTG TTCAGTTGCC AAACAACCTG TTCTACAACA CGGGTATTAC CACGTACATC TGGCTGCTCA ATAACAACAA ACCTGAAAAT CGCCAAGGCA AAGTGCAGCT GATTGATGCT AGCTTACTGT TCCGTAAGTT GCGTAAGAAC TTGGGTAATA AAAACTGCGA ATTTTCGCCA GAGCACATTG CGGAAATTGT CTCGACCTAT CTTGAGAATC AATCTGTTGA ACGTGCTATT GATGAGAAAG GCGATCCGGT CGGTATTGCC GCGCAAGTAT TCAAGAACCA AGATTTTGGT TACTACAAAG TCAATATTGA GCGCCCAGAT CGCCGAAATG CCCAATTCCG CGCTGACTTA ATTGAGCCGT TACGTTTTGA AAACTCACAG CGTGAAGTCA TGGAGTACTT GTACGCCGAA TATGGCGAGC AAGTCTATGA CGCAGGTTTT GTTAAAGGGA TTGAAAAAGA GATCACCAAG TGGTGTGAAG AAAATGATAT CAGCCTAAAC AAAGCGGCAA AAACCAAGTT GCTGGATACG AAAAACTGGA TTAAACAACG CACACTGGTG AATGTAGCGA GTCAATTACA CAAAAAGATC GGTGACGAAG TTTACAACGA CTTTAACCAG TTCAAACAAT TAGTAGATGC AGAACTTACA TCACTCGGCC TTAAGCTTTC AGCACCAGAA AAGAAAGCCA TCTTGGATGC GGTAAGCTGG TATGACGAAA ATGCAGAAAA AGTCATCAAG AAAGTCGCCA AGCTAAAGCA AGATAAGTTA GACGAACTGC TAGAAAACTA CGAATGTGAA CTGCAAGATT TGCCAGATTT CGGGTACTAC CCAACGGGCA ACCACAACGA GTTCGTGACT TATGAATCAA GTTCAGACTT GCGTGATAGC GAATCCGTTC CACTTGAGCA AAGCATTTAC CAATACTTCC TTGATGAAGT AAAGCCGCAT GTAGATGAAG CTTGGATAAA TCTTGAATCA GTCAAGATTG GTTATGAGAT CAGCTTTAAC AAGTACTTCT ATCGCCATAA GCCACTGCGC TCAATGGATG AGGTCGCTGG TGACATTATT GCGCTTGAAC AAAAAGCGGA AGGCTTAATT GCTGACATTT TGGGCATCTC TGTGGCTAAG GTTCAGGGGT AA
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Protein sequence | MDHSVHNKLV SFIWSIADDC LRDVYVRGKY RDVILPMVVL RRLDTLLEPS KEAVLEEVRF QKEEMNEIEL DDAPLCATSG YVFYNTSKWT LQTLFSTATN NQQILLANFE DYLNGFSENV KEIVECFNLK AQIRHMAGKD VLLDVVEKFV SPYINLTPAV KEDPEGNKLP ALSNLGMGYV FEELIRKFNE ENNEEAGEHF TPREVIELMT HLVFDPIKDN LPLSITVYDP ACGSGGMLTE TQNFVEEKYP ASNRDIYLYG KEINDETYAI CKSDMMIKGN NPENIRVGST LSTDEFSSNR FDFMLSNPPY GKSWASEQKH IKEGKEVVDG RFKVKLKDYW GVESEQEAIP RSSDGQLLFL MEMVTKMKSP QDSPLGSRIA SVHNGSSLFT GDAGSGESNI RRFIIENDML DAIVQLPNNL FYNTGITTYI WLLNNNKPEN RQGKVQLIDA SLLFRKLRKN LGNKNCEFSP EHIAEIVSTY LENQSVERAI DEKGDPVGIA AQVFKNQDFG YYKVNIERPD RRNAQFRADL IEPLRFENSQ REVMEYLYAE YGEQVYDAGF VKGIEKEITK WCEENDISLN KAAKTKLLDT KNWIKQRTLV NVASQLHKKI GDEVYNDFNQ FKQLVDAELT SLGLKLSAPE KKAILDAVSW YDENAEKVIK KVAKLKQDKL DELLENYECE LQDLPDFGYY PTGNHNEFVT YESSSDLRDS ESVPLEQSIY QYFLDEVKPH VDEAWINLES VKIGYEISFN KYFYRHKPLR SMDEVAGDII ALEQKAEGLI ADILGISVAK VQG
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