Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1354 |
Symbol | |
ID | 5136354 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 1444449 |
End bp | 1445543 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640532812 |
Product | HlyD family secretion protein |
Protein accession | YP_001217298 |
Protein GI | 147675452 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000000000336467 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCCTT CTTTTACTCG TTCAATGGCT GCAAAGCGCT CCTTGCTTAG CGCGGTGATC GCCTCGGCTT TATTGTTGGC TGGCTGCGGT GAAGCGCCAC AAATCAGCGC CCCCGCTCCT GTGGTCAAAC CCGCATTAAC CGAGATTGTC GCAAGTCAAC GCGCTTCCGA TCTCACGTTT AATGGCGTAG TGCGCGCCGC CCAGCGCGCT GATCTTGCTT TTCGCATCAG TGGCCGCTTA ACGGATATCG CGGTAAAAGA AGGCGACCAA GTGAAAAAAG GCCAATTACT GGCGAGCCTC GACTCACGAG ATGCCAAAAC GGCGCTGGAA GCTGCGCAAC TTGAGCTAAA AAATACCGAA CAAGAGTACC GCCGCGCCAA AGCCATTTTT GAGAAAACCC AAGCCATTTC TAAAGCCGAG CTGGATAAAG TCACCAATCG CTACGACCTT GCCAAAAACC GCGTTGAAGA GGCCAAACGC AAACTGGAGT ACACCCAAAT CACCGCCCCG TTTGATGGCG TCATCAGTGA AAAAACCATC GAGAATTTTG CTCAAGTGCA AGCCAATCAA GTGATCATGA TTTTGCAAGA TCTGAATGAT TTGGAAGTGG CGATTGAGAT CCCGCATCGT GTCATGCTCT CAGGTGTGCG CAATACCCGC GCGATCGCCG AGTTAAGCGC GATTCCCAAT CAGCAATTTG ATTTAAAGCT GCGTACCTAC TCCACTCAGC CAAGTTCGGA TTCACAAACC TACTCTGTAG TGCTTGGTTT TGAAGATTTG AAAGGCTTTC GCGTGATGCC CGGCATGTCA GCTAAAGTGA TCCCGGTTGC CGACAAACCA GCCGATGAAA ACACGCTCAT CACCCTACCA CTGACCGCCC TAGTGCCAGA TAACCAAGGC AAACAATTTG TGTGGGTAGT CAATGCGCAA AACCAAGCGG AAAAACGTTA CGTCGACATC GGAACTACCT ACAAAGATCG AGTGGTGATC ACTCAGCATC TCAAACCGGG TGAGCAGGTT ATTATCGCCG GTGTTTCGAG CGTACGCGAA GGCATGACCG TTCGTCCCTA CACGGATAAC AACGGAGCCC AATAA
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Protein sequence | MNPSFTRSMA AKRSLLSAVI ASALLLAGCG EAPQISAPAP VVKPALTEIV ASQRASDLTF NGVVRAAQRA DLAFRISGRL TDIAVKEGDQ VKKGQLLASL DSRDAKTALE AAQLELKNTE QEYRRAKAIF EKTQAISKAE LDKVTNRYDL AKNRVEEAKR KLEYTQITAP FDGVISEKTI ENFAQVQANQ VIMILQDLND LEVAIEIPHR VMLSGVRNTR AIAELSAIPN QQFDLKLRTY STQPSSDSQT YSVVLGFEDL KGFRVMPGMS AKVIPVADKP ADENTLITLP LTALVPDNQG KQFVWVVNAQ NQAEKRYVDI GTTYKDRVVI TQHLKPGEQV IIAGVSSVRE GMTVRPYTDN NGAQ
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