| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1351 |
|---|
| Symbol | pqiA |
|---|
| ID | 5137725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1440714 |
|---|
| End bp | 1442018 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640532809 |
|---|
| Product | paraquat-inducible protein A |
|---|
| Protein accession | YP_001217295 |
|---|
| Protein GI | 147675036 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2995] Uncharacterized paraquat-inducible protein A |
|---|
| TIGRFAM ID | [TIGR00155] integral membrane protein, PqiA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00603606 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTATGG ACAAACTAAA GAATCATTTG ATTGGTTGTG ACGAGTGTGG GCTAATAACC
AACGTACCAC TTTTAAGCCA AGCACAAACT GCGCAGTGTC CTCGTTGCGG GCATACGCTC
ACCCAAACAC CTCAAAAACC GTACCAAACC GCTGTCGCAT TAACCATCAG TTGCCTGATT
TTATTGGTGC TCAGCCTGAC GTTTCCTTTT ATGTCATTTA GCGTGCAAGG AATGACCCAA
GAAATTACGC TGTTAAATGC AGCCAAAATG CTCGGTGAAT TTCAAAACGT TTTATTAGCC
ATTTTACTCT TTACCACCGT TATCCTTTTT CCGGCGCTCT ACATCACCAT ACTTCTTTTT
GTCTCTTTTA AAGCCGCGCA AAGCACACAA CGACAACTTT CTTCATCCGA GATCCAGCGC
GCGAAGCTAT TGTGCAAAAC ATTACTCACA GTTCAGCCGT GGTTAATGGT CGATGTCTTT
TTAATTGGCG TATTAGTCAG TCTCATAAAA ATAGCCTCAC TAGCCGAGGT AGCGATGGGT
TACTCCTTCT GGGCATTTTG CTTTTTTGCC ATGTTGGTTG TGAAAACCGT TTCGCTAGTC
GATCGCTATT GGTTGTGGCA ACACTTTATT CCCGCCCAAA CTCCCCAAGG AGTCAACGCT
GGGCAAACTC ATTGCACACA CAACTCGGTC AGTTGCCACA CCTGTCAACA GATTAACTTG
CTCAGGCCAG ATCAAAAAAA GCCCACTTGT TTACGCTGTG GTAGTCGTTT ACACGCTTAT
CATCCACAGT TGAATTTGCA GTGGGCTTGG GCACTGTTAC TGGCTGCCAT CATTTTTTAC
ATTCCAGCGA ATCTTTATCC AATGATGTAT ACCGTGAGCC TCGGAAAATC AGAAGGCTCA
AGCATTATGC AAGGGGTGAT CCTTCTGTGG CACCTCGGCT CTTATCCGGT GGCGATGGTG
ATTTTCTTAG CCAGTATTTT TATCCCTATG GCCAAAATGT TTGCACTCGG TTGGCTCTAC
TGGCAGGCCG GAAAACTCAA TGTATTTCCA GAGCAGCAGA ATCTAAAACG TCTCAAAGTG
TATCGCGTAA CCGAATTCAT TGGCCGCTGG TCAATGATTG ATATCTTCGT CGTGGCTATT
TTGGTGTCTT TAGTACAGTT GCATAATCTG ATGGCGATTT ATCCCGGCCC GGCAGCGCTC
TCTTTTGCTG CAGTAGTATT ATTGACTATG CTCTCAGCCA TGGTTTTTGA TTCGCGAATC
TTGTGGCATG AGCCGCCAGA ATCCCCACCA ACAAAAATAA AATGA
|
|---|
| Protein sequence | MTMDKLKNHL IGCDECGLIT NVPLLSQAQT AQCPRCGHTL TQTPQKPYQT AVALTISCLI
LLVLSLTFPF MSFSVQGMTQ EITLLNAAKM LGEFQNVLLA ILLFTTVILF PALYITILLF
VSFKAAQSTQ RQLSSSEIQR AKLLCKTLLT VQPWLMVDVF LIGVLVSLIK IASLAEVAMG
YSFWAFCFFA MLVVKTVSLV DRYWLWQHFI PAQTPQGVNA GQTHCTHNSV SCHTCQQINL
LRPDQKKPTC LRCGSRLHAY HPQLNLQWAW ALLLAAIIFY IPANLYPMMY TVSLGKSEGS
SIMQGVILLW HLGSYPVAMV IFLASIFIPM AKMFALGWLY WQAGKLNVFP EQQNLKRLKV
YRVTEFIGRW SMIDIFVVAI LVSLVQLHNL MAIYPGPAAL SFAAVVLLTM LSAMVFDSRI
LWHEPPESPP TKIK
|
|---|
| |