Gene VC0395_A1346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1346 
Symbol 
ID5136426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand- 
Start bp1434829 
End bp1435458 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content48% 
IMG OID640532804 
ProductTetR family transcriptional regulator 
Protein accessionYP_001217290 
Protein GI147675365 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones45 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACTCA GTGAGCAAAA ACGGTTGGCG CTGATTGAAG CAGCAAAAGA AGAGTTTACC 
CAGTTTGGAT TCCATGCAGC GAATATGGAT CGCGTTTGCG AACGCGCAGG TACCTCAAAA 
CGCACCTTGT ATCGCCACTT TACCAGTAAA GAGTTGCTCT TTATTGAAGT GATCAATCTT 
CTGGTGGCAC AGCCGCACAA GGTTGGTTTT GAGTATCAAT CTACCCGTTC TCTTGCGGAT 
CAGTTGCACG ACTACTTTGC GGCAAAAATT GACCTACTGT ATCGAACGAT TGGCCTTGAT 
GTGCTGCGGA TGATTGTGGG GGAATTTGTG CGCGATCCAG CCTTAACGCA GCAATATCTC 
GCGTTGATGG GGACTCAAGA TACGGCGCTG ACTGCGTGGC TGCAAGCTGC CATTAAGGAT 
GGAAAACTGA TTGAGAAAGA AGTGGCTCCC ATGGCGACAA CCTTGATGAA TCTCTTTCAT 
GGTCAGTTTT TATGGCCGCA GTTGCTGGCC GCGGTGGAGC TGCCTGATGC CAAACAGCAG 
CAAATCATGA TGGATGAAAT CATTCGTGTG TTTGTGTTGA GCTACGGTGT ATCCTCTCCA 
AGTCATTTGA GTATAGAACT AAAGCCTTAG
 
Protein sequence
MKLSEQKRLA LIEAAKEEFT QFGFHAANMD RVCERAGTSK RTLYRHFTSK ELLFIEVINL 
LVAQPHKVGF EYQSTRSLAD QLHDYFAAKI DLLYRTIGLD VLRMIVGEFV RDPALTQQYL 
ALMGTQDTAL TAWLQAAIKD GKLIEKEVAP MATTLMNLFH GQFLWPQLLA AVELPDAKQQ 
QIMMDEIIRV FVLSYGVSSP SHLSIELKP