| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1344 |
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| Symbol | gabD |
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| ID | 5136568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1433345 |
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| End bp | 1434811 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640532803 |
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| Product | succinate-semialdehyde dehydrogenase |
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| Protein accession | YP_001217289 |
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| Protein GI | 147674887 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGAGTC TTGCCATGTT ACCGACCGAT TTTCCATTTT TTCACCAAAG CGCCTTTATT
AATGGGCAGT GGATTTTAGG TGAGCCACAG GCAAGGCAAA CGGTAACCAA TCCGTTTGAT
GGCTCCCTCA TTGGCTCTGT TCCTTTATTG AGTGCGGCTC AGGTGCAAGA AGCGATTGCC
GGTGCGCAAG CGGCGCAAAT TTTATGGTGC CAGCAACCCG CTGAAAATAA AGCAAAAATT
TTGCGCCGTT GGTATGAGCT TATTGAACAG CATCATGAAT CATTGGCGAA GTTATTAACT
ATTGAACAAG GTAAACCGCT GGCAGAAGCC AGAGGAGAAA TTCACTACGC CGCCAGTTTT
GTTGAATGGT ATGCCGAAGA GGCCAAACGT GCATATGGCG AGCTGATCCC ATCCCATAAA
CCTGATGCGC GAATTATGGT TTCACGTCAG CCTGTTGGCG TTGTTGCCGC GATTACGCCT
TGGAATTTCC CCGCCGCCAT GATTACCCGT AAATGTGCCC CTGCCTTTGC AGCTGGTTGC
GCTGTGGTTT TAAAACCAGC GCCGGATACG CCGTTCACGG CTTTAGCTTT GGCCGATCTT
GCGCAGCAAG CGGGAATCCC TGATGGTTTA TTGCAAGTGG TGACGGGCGA TGCGATTGAA
ATCGGGCGTG TACTGACGGA AAGCAAAACG GTACGCAAAC TCTCATTTAC TGGCTCAACC
GGGGTTGGCA AGCTTTTGAT GGCACAATCG GCCAATAACG TGAAAAAACT CTCGCTTGAG
CTGGGAGGAA ATGCGCCGTT TATTGTGTTC GAAGATGCGG ACATTAATGC CGCGATTGAT
GGTGTGATGG TGGCGAAATT TCGTAATGCT GGACAAACTT GCGTGTGCGC TAACCGGATT
TATGTGCATG ACGCGGTATA TGATCAATTT GCTGCCAAGT TGGTGGATCG GGTCAGCAGA
CTCAACGTCG GTTATGGTTT GGATGCCGGT GTAAACATCG GTCCGCTGAT TAATGATGCC
GCGGTTGCTA AAGTCACATC ACATATAGTG GATGCCCAAA GCAAAGGAGC GAAAGTGATG
TTTGGTGCGT TGCCTGAAGC GGGCAGCCGT TTATTCCAGC CACACGTGTT AACCGAAGTG
ACCGACGAAA TGCGCGTTGC TGACGAAGAA ACCTTCGGCC CCTTGGCCGC ACTGTTTCGT
TTTAGCTCTG AGCAAGAAGT GATCGAGCGA GCCAATGCGA CCGATTCGGG TTTGGCCGCT
TATTGTTATA CCCAATCTTT GCGCCGGGCA TGGCATATGA GTGAAGCACT TGAAGCGGGG
ATTGTCGGCA TCAACGAAGG GTTGATTTCC ACTACGTTAG CGCCTTTTGG TGGCATCAAA
GAGTCGGGTC TTGGTAGAGA AGGGGCGAAA CACGGCCTTG AAGAGTACCT TGAAGTCAAA
TATACCCTTA TGGGTGGACT AGCTTAG
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| Protein sequence | MRSLAMLPTD FPFFHQSAFI NGQWILGEPQ ARQTVTNPFD GSLIGSVPLL SAAQVQEAIA
GAQAAQILWC QQPAENKAKI LRRWYELIEQ HHESLAKLLT IEQGKPLAEA RGEIHYAASF
VEWYAEEAKR AYGELIPSHK PDARIMVSRQ PVGVVAAITP WNFPAAMITR KCAPAFAAGC
AVVLKPAPDT PFTALALADL AQQAGIPDGL LQVVTGDAIE IGRVLTESKT VRKLSFTGST
GVGKLLMAQS ANNVKKLSLE LGGNAPFIVF EDADINAAID GVMVAKFRNA GQTCVCANRI
YVHDAVYDQF AAKLVDRVSR LNVGYGLDAG VNIGPLINDA AVAKVTSHIV DAQSKGAKVM
FGALPEAGSR LFQPHVLTEV TDEMRVADEE TFGPLAALFR FSSEQEVIER ANATDSGLAA
YCYTQSLRRA WHMSEALEAG IVGINEGLIS TTLAPFGGIK ESGLGREGAK HGLEEYLEVK
YTLMGGLA
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