Gene VC0395_A1341 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1341 
Symbol 
ID5136900 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand- 
Start bp1430968 
End bp1431642 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content48% 
IMG OID640532799 
ProductTetR family transcriptional regulator 
Protein accessionYP_001217285 
Protein GI147674301 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGGCGAG AGTATATTTC AAACAGTTGT TTGATACGAG TGATTGAAAT GGCATTACGC 
AGTAGTACTA AGGAAAAAAT ATTGGATGTA GCAGAAGGGC TGTTTGCGGA ATACGGCTTC 
AATGATACCT CTTTGCGCAC GATCACCAGT AAAGCGGGGG TGAACCTTGC GTCGGTCAAC 
TACCATTTTG GTGACAAAAA AACCTTAGTT CGAGCGGTAC TCAATCGTTA TCTCGAAGCT 
TTCATGCCGG AGATGAAACA GTCGCTTGAG CGGCTTAACG AGCGGGACGA TTACGATATG 
GCTGAAGTTT TTGAAGCGCT ACGTGCTCCC TTGCGTTCGT TAAGCGAATT GCGCCCCAAT 
GGCACCAGCC GTTTTATGCT GCTGATTGGC CGGGGTTATA CCGATGTGCA GGGCCATCTC 
CGTTGGTTTA TTACCAATCG CTATAATGAT GTGCTAACCC TATTTACCGA TTCCGTGCTT 
AAGGCGAACC CCAACTTGAC TCGCGAAACC TTGTTTTGGC GGTTGCATTT CACCTTAGGT 
ACCTGCGTCT TTACCATGGC GTCGAGTCAA GCGTTGGCAG AGATTGCAGA AAATGATTTT 
GGAAGCAAAG TTGATCCTAA GTCTGTGGTC GATCAACTGA TTCCATACCT CGCGGCCGGT 
GTGGCGGCGA AATAA
 
Protein sequence
MWREYISNSC LIRVIEMALR SSTKEKILDV AEGLFAEYGF NDTSLRTITS KAGVNLASVN 
YHFGDKKTLV RAVLNRYLEA FMPEMKQSLE RLNERDDYDM AEVFEALRAP LRSLSELRPN 
GTSRFMLLIG RGYTDVQGHL RWFITNRYND VLTLFTDSVL KANPNLTRET LFWRLHFTLG 
TCVFTMASSQ ALAEIAENDF GSKVDPKSVV DQLIPYLAAG VAAK