| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1320 |
|---|
| Symbol | smtA |
|---|
| ID | 5136779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1408814 |
|---|
| End bp | 1409596 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640532778 |
|---|
| Product | putative metallothionein SmtA |
|---|
| Protein accession | YP_001217264 |
|---|
| Protein GI | 147674195 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0000108011 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACAGAAG ATCGCAATTT CGACGATATT GCCCACAAAT TTGCAAAAAA TATATACGGT
TCTGACAAAG GTGAGATCCG CCAATTCATT GTTTGGGAAG ATTTGGAGCA GCTTCTCAGT
CAACTGGACA CGCAAAAAGT TCCCTTGCAC GTGCTCGATG CGGGTGGCGG CTTGGCGCAA
GTATCGCAAA AAATCGCTCG CCTTGGGCAT CGAGTGACAC TCTGTGATCT TTCTTCGGAA
ATGTTGCAAT TGGCCGAACA GGATATTGCA AACAATGGTC TGCTTGAGAA GTATCGCTTC
GTCCATTCAC CAGTGCAGAC GATTCAAGCA CACCTTGATG CGCCCGTGGA TTTGGTGCTG
TTTCATGCGG TGATGGAATG GTTAGCGGAA CCTAAACCAG CGTTGCAAAA TTTGCTGGCG
CAAGTCAGAC CGGGCGGCAT GGTGTCGGTG ATGTTTTACA ACTATCACGG TTTGGTTTAC
AAAAACGCCG TGTGTGGCAA CATTCCGCAC GTGCTAGAGG ATATGCCGCA CCGCAAACGG
TTTAAATTAC AACCGCAGAA AGGCTTGCTC CCCGAAGAAG TCTACCAATG GATCGAAGAA
TCGGGTTTTG AGATCTGCGG GAAATCCGGT ATTCGTTGTT TCAGTGATTA CATCGGAAAC
ATGAAAAACA TGGGCGAATA CCAGTATGAG GATTTGGTGG CACTGGAGCG CAAATTCTGC
CGTCAGGAGC CTTACCTCTC ATTGGGTCGA TACATTCACG TATGGGCTAA GAAAAAACAA
TAA
|
|---|
| Protein sequence | MTEDRNFDDI AHKFAKNIYG SDKGEIRQFI VWEDLEQLLS QLDTQKVPLH VLDAGGGLAQ
VSQKIARLGH RVTLCDLSSE MLQLAEQDIA NNGLLEKYRF VHSPVQTIQA HLDAPVDLVL
FHAVMEWLAE PKPALQNLLA QVRPGGMVSV MFYNYHGLVY KNAVCGNIPH VLEDMPHRKR
FKLQPQKGLL PEEVYQWIEE SGFEICGKSG IRCFSDYIGN MKNMGEYQYE DLVALERKFC
RQEPYLSLGR YIHVWAKKKQ
|
|---|
| |