| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1295 |
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| Symbol | |
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| ID | 5137643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1375904 |
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| End bp | 1377640 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640532753 |
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| Product | putative alpha-1,6-galactosidase |
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| Protein accession | YP_001217239 |
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| Protein GI | 147673686 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3345] Alpha-galactosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 50 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCATC TCAGATTAGC GAATGGGCGA GAAATCCTAG TGCAGCAAGC GGATATTGAG
CTGGAGATCG CAGGCAATGA GCTTTTTGCT CGGTATATCG GGTTACACAA TCGACCTTTT
GAGCGCCGTT ATCCACTGTT TAGCACTTTA CTGGATGTCG AATCGGATGC CCGCTTAGTG
GGGGATGGCT TTCAAATGCT GTCGCAAGCC TCAGGTACGC TAAGCCATAT CCAAGAAGTT
GGACGATGTC CAGATAACAA TCTCAGTTAC CGCATCTACC CGCATGATGC GCCAAAGCGT
TTTTACAATA CCTTGATGAT AGAGGCCGCT GGCCGCTATC TGTTGTTTGG CTTTACTTCT
TGCCAGCGTT TTGCGGGCTT TTTTGAAGTG CTCCGTCACC CGCAGCATTG GGTGTTAAGC
GCGTTTATTG ATGGAGAGGA AACCCGCCCA CAAGACTGGA TCACCAATCA ATTGGAATCG
GTGATTTGCT TAGAAGGCGA ATCCATGTCA GAGCTTTACC AAGCCTATGC CGAGGCGATC
TCTCGCCACC ATCCGCCAAG ACCCCATCTC AAAGATCCCG CACCAATGGG CTGGTGTTCT
TGGTACGCCT ATTATGCAGA GGTGACCGAA CAAGATATCA AAGAGAATGT CGCGATATTG
GCGGAGCGTC ACCCAGAATT GGAATGGGTG CTGCTGGATG ACGGCTATCA AGCGTTTATG
GGCGATTGGC TCACACCATC CCAAAAATTT CCCAGTGGTA TTCAGCAAGT GGTTGCCGAT
ATTCGAGCCC AAGGTAAAAA GCCCGCCATT TGGCTCGCGC CTTTTATCGC GGAAGCGGAT
TCAGCGGTCT TTCGTCAGCA TCCGGACTGG TTTGTGAAAA ATGCCGCAGG TCAGCCACTC
AAAGCCGAAG AGATCACTTA TGGCGGTTGG CGCTGTACGC CTTGGTATGT GTTGGATGGT
TCTCATCCGG ATGTGCAAGA GCACTTGACC CAAGTGGTGA AAACCCTGCG TGAAGAGTGG
GGCGTTGAAC TGTTTAAGCT GGATGCCAAC TACTGGGGAA CGCTACAAGG CCAGCGTTTT
CAATCGGGTG TTACGGGTGT AGAAGCGTAT CGAATGGGCA TGCAAGCCAT CGCGGAAGGC
GCAGGCGATG GGTGGCTACT CGGTTGTAAT GCGCCGATGT GGCCTTCACT GGGTTTGGTG
GATGCAATGC GTGTGTCGGA TGATGTAGAG CGCAATGCCG ATCGCTTTTG CCAAATTGCG
CGTGAAACCT TAATGCGCAG TTGGCAGCAC CGGCAACTGT GGCAAATCGA TCCGGATTGC
TTAACGCTCA CCTCGCTGCC CAATCAAAGT GCCGATCGCG CCAGCTACGA ATTCCACCGT
AATTTGCTGC TTGCCAGTGG TGGTTTGCTA TTGTCAGGCG ACCCACTGCC GAAATTAACA
CCGTTTGCAA AACAGAGCCT GAAACGTTTA CTCAAACGAT TCCAATACAG TCAGAAGGCG
GCCAAAATCA CTTCCTTGAG TATGCGCCAT GCCTTCTTAC CGCTGACCGA TAAAAATGAT
CTGCACTGCT TGTTTAACTT CAACGGTAAA GCTCAGGAGT TTACCTTGGT CGCCAATCAT
CCGGTGCAAT GGTATGACTA TTGGACAGGA GAGCAATTAA GCAGCGAACC TTCCAAACTG
CTCATCGTTA ACTTAGAGAA GGGGTTACAA AGCCGCGCCA TTTTTACAGT GGGTTAA
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| Protein sequence | MSHLRLANGR EILVQQADIE LEIAGNELFA RYIGLHNRPF ERRYPLFSTL LDVESDARLV
GDGFQMLSQA SGTLSHIQEV GRCPDNNLSY RIYPHDAPKR FYNTLMIEAA GRYLLFGFTS
CQRFAGFFEV LRHPQHWVLS AFIDGEETRP QDWITNQLES VICLEGESMS ELYQAYAEAI
SRHHPPRPHL KDPAPMGWCS WYAYYAEVTE QDIKENVAIL AERHPELEWV LLDDGYQAFM
GDWLTPSQKF PSGIQQVVAD IRAQGKKPAI WLAPFIAEAD SAVFRQHPDW FVKNAAGQPL
KAEEITYGGW RCTPWYVLDG SHPDVQEHLT QVVKTLREEW GVELFKLDAN YWGTLQGQRF
QSGVTGVEAY RMGMQAIAEG AGDGWLLGCN APMWPSLGLV DAMRVSDDVE RNADRFCQIA
RETLMRSWQH RQLWQIDPDC LTLTSLPNQS ADRASYEFHR NLLLASGGLL LSGDPLPKLT
PFAKQSLKRL LKRFQYSQKA AKITSLSMRH AFLPLTDKND LHCLFNFNGK AQEFTLVANH
PVQWYDYWTG EQLSSEPSKL LIVNLEKGLQ SRAIFTVG
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