Gene VC0395_A1276 details

Gene Information

• Locus tag: VC0395_A1276
• Symbol: metC
• ID: 5136344
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 1356298
• End bp: 1357488
• Gene Length: 1191 bp
• Protein Length: 396 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640532734
• Product: cystathionine beta-lyase
• Protein accession: YP_001217220
• Protein GI: 147673284
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases
• TIGRFAM ID: [TIGR01324] cystathionine beta-lyase, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 44
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAGAAG GTAAAAAGAC CCGCCTCGTT ACCGCGGGAC GCAACAAAAA ATGGACACTT 
GGCGTGGTTA ACCCCCCAGT ACAACGCGCT TCTACTGTGG TGTTTGATAC GGTCGCACAA 
AAAAACCAAG CGGCGATCAA TCGCGCCAAC AAAACCCTGT TTTACGGACG TCGTGGCACC 
ACAACTCACT TCGCGTTTCA AGAAGCAATG GTTGAGATTG AAGGCGGCGC GGGTTGCGTG 
CTCTACCCTT GTGGCGCAGC GGCCATCACC AACGCGATTC TCTCTTTTGT TGCGCAAGGT 
GACCATATCT TGATGGTCGA TACCTGTTAC GAACCCACCC GTGACTTTTG TGAGAAAGTC 
CTGAAAAAAC TTGGTGTATC AACCACCTAT TATGATCCTA TGCTTGGCGA AGGTATTCGC 
GAGTTGATTC AACCTAATAC CAAGGTTCTG TTTACCGAAT CACCGGGCTC ACTGACCATG 
GAAGTGCAGG ATATTCCGAC ACTCTCTCGC ATCGCTCACG AGCACGACAT CGTTGTCATG 
TTGGATAACA CTTGGGCGGC TGGGGTACTG TTCTCACCCT TCGAACATGG CGTCGATATT 
TCCATTCAAG CAGCGACCAA ATACATTGTC GGTCATTCTG ATGTGATGCT CGGTACTGCG 
GTCGCCAATG AGAAGTGTTG GGCACAACTG CGTGAACACA GCTATTTGAT GGGACAATAT 
GCCTCACCTG ACGATGTGTA CATGGCAATG CGTGGATTGC GCACCCTCGA TGTACGTTTA 
CGCCAGCATG AACAAAACAG TTTACAGATT GCCCAGTGGT TGCAAACTCG CCCAGAAGTC 
GATCATGTTC GCCACCCTGC GTTAGCGACC TGTCCGGGGC ACGAGTTTTT CGAACGTGAT 
TTTACTGGCG GCAATGGCTT GTTCTCTTTT GTGTTGAAAA CGACGCATCC AGAAGCCACA 
ACCGCTCTAC TCGATGGCAT GCAACACTTC AGCATGGGCT TTTCTTGGGG TGGATTTGAA 
AGTTTGATCT TAGCCCACGA ACCCAAAGCC TTTACCTCTC TTCGCTCAGT CGCAAACCCT 
CACTTCTGCG GCACTCTACT CCGGGTTCAT ATCGGGTTAG AAGATGTCGA AGATTTAATC 
GCCGATCTGG AAGCGGGTTT TGCGCGCTAC AACCAAATCC TGCATGCATA G 

 

Protein sequence

MSEGKKTRLV TAGRNKKWTL GVVNPPVQRA STVVFDTVAQ KNQAAINRAN KTLFYGRRGT 
TTHFAFQEAM VEIEGGAGCV LYPCGAAAIT NAILSFVAQG DHILMVDTCY EPTRDFCEKV 
LKKLGVSTTY YDPMLGEGIR ELIQPNTKVL FTESPGSLTM EVQDIPTLSR IAHEHDIVVM 
LDNTWAAGVL FSPFEHGVDI SIQAATKYIV GHSDVMLGTA VANEKCWAQL REHSYLMGQY 
ASPDDVYMAM RGLRTLDVRL RQHEQNSLQI AQWLQTRPEV DHVRHPALAT CPGHEFFERD 
FTGGNGLFSF VLKTTHPEAT TALLDGMQHF SMGFSWGGFE SLILAHEPKA FTSLRSVANP 
HFCGTLLRVH IGLEDVEDLI ADLEAGFARY NQILHA