Gene VC0395_A1258 details

Gene Information

• Locus tag: VC0395_A1258
• Symbol: vieA
• ID: 5137267
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 1333407
• End bp: 1335161
• Gene Length: 1755 bp
• Protein Length: 584 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640532716
• Product: response regulator VieA
• Protein accession: YP_001217202
• Protein GI: 147675130
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; [COG2200] FOG: EAL domain

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.204001
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATAA TGATAGTAGA AGATGATCGA ATTCAGGCGA CTAGCCTGAA GCTCAAGCTA 
AGACAGCTTG GGTTGGATGA CGTCATCTTG GCTGAAAACG GATTTGCTGC CTTAGAACTG 
TGTAACAAAG TGGGTATCGA TTTGATGTTT TGCGATATTC GAATGCCGCA GATGGATGGG 
ATCAGTTTGT TATCACAACT GAGTTTACAG GCACCTAAGC TAGGTGTGGT GATACTCAGC 
GCTGTGGAAG ATACGATTCT TGAGTTAACC CACAACATGT GTAGTTTGGC TGGATTTGCT 
TATGTTGATC GCCTACCTAA GCCCTACGAA GTGGAGGATT TACAGCGTGT TGTCGAGGGG 
TTTCAAAAGC AAACGGAGCC CGAAACCAGT CACAAACCTG CAATCACGCT AACCTGTGAC 
GAGATTGAAC AAGCTTTTCT GCACGACCAT ATTTTTAATT ACTATCAACC ACAGTTTGAT 
TTTCGCAGTG GGGCGATGGT CGGCGTTGAA GCGCTAGTAC GTTACGAGCA CCCAACTCAT 
GGCATGTTAA GCCCAGCAGT GTTTCTGCCT TTAATTGAGC AGTGTGGCTT GCATGAGAAA 
CTCTTCCTTA CCGTATTAGA AAAGTCGGTC TCTGCACTGG CCAGTATTGG TGCTGACTTG 
CAGCTTTCCG TCAACATCAG CCAGCGCAAC TTGCAACACT CAATCTGTGA TCCCATTCTC 
GCCATCTGTG AGCGGTATGG TTTTCCCGCA AGCAAACTGA CTCTAGAGAT GACGGAGCAT 
GAGGTGTACA ACAGAACCCC GACCTCATTG GCCAACCTTG CTCGACTGCG AATGTATGGC 
GTTGGGCTAT CGATTGATGA TTTTGGTACG GGTTACGCGT CATTAGGTCA ACTGGCTCAA 
CTGCCTTTTA CGGAACTCAA GATTGATCGC AGCTTTGTGC ATGACTTGGC AACCAACTAC 
AAACACCAAC AATTGACCAA TATGTGTTTG TTGCTGGCTC AATCTTTGGG GTTGCACTGC 
GTCGTCGAAG GGGTAGAGAA CGAAGAAACA TGGCAATACT TGCGTCAACT TGGGGTAGAT 
ACTTGCCAAG GTTACTACGC CGCTAAGCCC ATGCCGATTG CTCAGTTGAG CGAACTTTAC 
ACTAAAAATC GTCGTCAGTG TTTAGGTTGT CAAAGCATGG ATGATGGCTG GCAAATCTTG 
CTGGTGGATA ACCATATGCT CAGCGCCACG GCATTACAAA AAGTGCTCAA TAAAGAAGAG 
AACGTCAGCA AGGTGTTTGT GGCGCAAGAT ATTGAGCAGA CGCTGCACAA ACTGCGCGAT 
TTACCGATCA ACCTGCTGGT CGTCGAAAGT CGGTTTTTAT CGACAATCAG TCCTGCGGCA 
TTTCACGAGT TGCTTGAGCC TTACTATCGA GGGGCGCTCT TGGTGCTGCA TGATGGATTA 
ACCGCTGAAG CTCAAGAGGA TGAGCCCAAA GCCATCGTCG TCAAAGCGAA TACTTTGATG 
GAAACCAGCT CCCGGATCTT ACTGCAAGCG CAGCAGAGCA ATGTGCGCCC ACAGGCGCAA 
CAAGAAGAGC TTGCTCAGCT TTCTGAGCGA GAGTTGACGG TTGCGAAAAT GTTAGTTGAA 
GGTCTAACGA ATAAAGAAAT CGCCTTACAA CTCGATATCA ACCAAAAAAC AGTAAGCACT 
TACAAGACTA GGATTATGAC CAAGTTAGGG ATTAAATCGG CCATGGAATT GGTGCGTTTT 
GTAACATTAA AATAG 

 

Protein sequence

MKIMIVEDDR IQATSLKLKL RQLGLDDVIL AENGFAALEL CNKVGIDLMF CDIRMPQMDG 
ISLLSQLSLQ APKLGVVILS AVEDTILELT HNMCSLAGFA YVDRLPKPYE VEDLQRVVEG 
FQKQTEPETS HKPAITLTCD EIEQAFLHDH IFNYYQPQFD FRSGAMVGVE ALVRYEHPTH 
GMLSPAVFLP LIEQCGLHEK LFLTVLEKSV SALASIGADL QLSVNISQRN LQHSICDPIL 
AICERYGFPA SKLTLEMTEH EVYNRTPTSL ANLARLRMYG VGLSIDDFGT GYASLGQLAQ 
LPFTELKIDR SFVHDLATNY KHQQLTNMCL LLAQSLGLHC VVEGVENEET WQYLRQLGVD 
TCQGYYAAKP MPIAQLSELY TKNRRQCLGC QSMDDGWQIL LVDNHMLSAT ALQKVLNKEE 
NVSKVFVAQD IEQTLHKLRD LPINLLVVES RFLSTISPAA FHELLEPYYR GALLVLHDGL 
TAEAQEDEPK AIVVKANTLM ETSSRILLQA QQSNVRPQAQ QEELAQLSER ELTVAKMLVE 
GLTNKEIALQ LDINQKTVST YKTRIMTKLG IKSAMELVRF VTLK