| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1256 |
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| Symbol | |
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| ID | 5137601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1330081 |
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| End bp | 1331700 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640532714 |
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| Product | collagenase |
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| Protein accession | YP_001217200 |
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| Protein GI | 147675061 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0000029967 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACAAG TGATTGCTCG CTATCCTTTA GGGAGTAAAC ACGACAAATT GTGGTTAGCT
GCCGTTGAGA TGTTGCATTA TTACGCACCT GAGGTGCTGC AACAGCTCGG TATCGATCTT
GATGCAGCGA AGCGCGATTT AGCCGCGCGC ATTTTGCCAA ACCGCTTTGA ATGCCAAGGC
CCTGCCATTA TTCGCTCGCA AGATCTTTCC GATGCGCAAG CCGCGCAAGC CTGTGACGTA
TTGGATAAAA AAGAGCAAGA TTTTCACCAA GTGGCAAATA CGGGATTGGC ACCGGTCGCT
GATGATTACA ACACTCGCGT TGAGGTGGTG GTGTTTGCCA ATAACAGCAG CTATGTCAAT
TACTCCTCGT TTTTATTTGG CAATACCACC GACAATGGCG GGCAGTATTT AGAAGGCAAC
CCTGCGGATC AAAACAATCA AGCCCGTTTT GTCGCCTATC GTTATGCCAA TGATGCGGAT
TTGTCGATTC TCAATTTAGA GCATGAGTAC ACTCATTATC TGGACGCGCG CTTCAACCAG
TATGGTTCGT TCAGTGATAA CTTAGCCCAT GGTCATATTG TGTGGTGGTT AGAAGGTTTC
GCGGAATATA TGCATTATAA GCAGGGCTAC CAAGCGGCGG TTAAGCTGAT TTCTCAAGGT
AAATTGAGCC TTTCTGATGT GTTTGCTACC ACCTACTCGA ATGATACGAA CCGCATTTAT
CGCTGGGGCT ACTTAGCGGT ACGCTTTATG TTGGAAAAGC ATCCACAAGA CGTGGAAAGC
TTGCTGGCAC TCTCTCGTAC TGGGCAGTTT GATCAGTGGG CACAGAGTGT CAAATTACTG
GGTGAACGCT ATAACACCGA GTTTTCGGCG TGGCTGGATA CATTGCAACG CGATAATCCA
GATAATCCAG ATAATCCAGA ACAGCCTAAC CCAGAACCCA ATGCGGTCAC TCAGTTAGCG
GCCAATTCGT CCTTAACACT GACAGGAAAG GCGTACAGCG AGCATCTGTT CTATGTGGAT
GTGCCAGAGT ACAGCCGAGA GTTCCACGTT CAGATCTCCG GGGAGGGAGA TGCCGATCTG
TACATGAGCT ACCAGCAGGT TGCCCATTAC TATGATTATC AGGTAACGGA ATTTACCTAT
GGCAGCAACG AGCAAATTAC CTTCAAACCT GAGCAGAATG GTTACATCAA ACCCGGACGC
TACTATTTAA GTGTGACAGG ACGTGCGGAT TACTCAGCAG TCATCCTCAA CACACACCTA
GTCACTGAAC AGCCTAATGA GCAACCGACT ATCAAAGATG ATCTTGCTCC TGTGCTTTTA
GAAGCGGGTA ACAGTCAAAG CCTTACCGTG CATCGACAAC GTTACGTCGC CATCTACGTG
CCAAAAGGCG TCAGTGAAGT ACAAGTATGG CTCACCGCTT CAGAACAAAA CCGAGGCAAT
GTCGATCTGT TTGCAGCAAA AGCGTATTGG CCAACTCGAG AGCAGTTTGA GCACGCCTCA
ACTGGTGCGG GCAGTCATGA GTATTTGCGT ATTCCTGTGA CACAAGAAGG CTATGTGCAC
TTTTCGTTAA ACGCACAACA ACTCGGCGAC ACGGTCGAAA TGGTGGCCTA TTTCGACTGA
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| Protein sequence | MRQVIARYPL GSKHDKLWLA AVEMLHYYAP EVLQQLGIDL DAAKRDLAAR ILPNRFECQG
PAIIRSQDLS DAQAAQACDV LDKKEQDFHQ VANTGLAPVA DDYNTRVEVV VFANNSSYVN
YSSFLFGNTT DNGGQYLEGN PADQNNQARF VAYRYANDAD LSILNLEHEY THYLDARFNQ
YGSFSDNLAH GHIVWWLEGF AEYMHYKQGY QAAVKLISQG KLSLSDVFAT TYSNDTNRIY
RWGYLAVRFM LEKHPQDVES LLALSRTGQF DQWAQSVKLL GERYNTEFSA WLDTLQRDNP
DNPDNPEQPN PEPNAVTQLA ANSSLTLTGK AYSEHLFYVD VPEYSREFHV QISGEGDADL
YMSYQQVAHY YDYQVTEFTY GSNEQITFKP EQNGYIKPGR YYLSVTGRAD YSAVILNTHL
VTEQPNEQPT IKDDLAPVLL EAGNSQSLTV HRQRYVAIYV PKGVSEVQVW LTASEQNRGN
VDLFAAKAYW PTREQFEHAS TGAGSHEYLR IPVTQEGYVH FSLNAQQLGD TVEMVAYFD
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