Gene VC0395_A1255 details

Gene Information

• Locus tag: VC0395_A1255
• Symbol: vcc
• ID: 5136480
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 1329281
• End bp: 1330039
• Gene Length: 759 bp
• Protein Length: 252 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640532713
• Product: collagenase
• Protein accession: YP_001217199
• Protein GI: 147675491

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000000000048292
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCTTTTC AACAACGTAT CCAACATCAC CCCATTGCTT GGGCGTGCGT CATCGCTGGT 
CTTTCTTACT CCTCCTATTC ACAAGCAGCT TGTGAGATAC AAGATTTACA GCCCGCGCGC 
GATCTTCCTG CGCAAATTGC CGTGGCTACA CAAGCTTGTT ACAACTCATG GTTTTACGCA 
CCAACGGCAA CCTTGGATAA CCTCTATAGC GAAGCTTCTC TAGCGCATTT ACAAACTGTG 
CTCGATGCTG AAATTGCTCG CTATACTGGT GAAGCGCAGC AAGCTCGTCG CTTGGAAAAC 
TATGGTGAGT TCATTCGCGC AGCGTATTAC GTGCGTTATA ACGCTGGGCG TGAACCTTAT 
TCTCAAGCAC TCAGTCAACG CTTTGCTCAA TCGATCGACC GCTTTTTACG TCATCCGCAT 
GCTTTTGACC AAGGCCGTGA ACAGGTGGGC GCAATGAAGA GCCTAAGTTT AATGGTGGAT 
AACGTTAAGC AGTTACCGCT CACTATGGAT GCGATGATCT TAGCTCTGCA CCGCTTCAAT 
CGAGAAACGG CGCAAGATAC ACAATGGGTC GATGGTTTAA ATAACTTATT CCGTGCGATG 
TCTGGCCATG TGGGTAACTC GGAGTTTTAC CGCTACTTAG CCGCCAACAC TCAACATATT 
GATACCTTGT ATCGATTCGC TCTGGACAAT GAGTGGGCAT TAGAAACCGA CGCTGAGTTT 
TTGGTTTACA ACGCTCTGCG TGAAACTGGC GCTTATTGA 

 

Protein sequence

MSFQQRIQHH PIAWACVIAG LSYSSYSQAA CEIQDLQPAR DLPAQIAVAT QACYNSWFYA 
PTATLDNLYS EASLAHLQTV LDAEIARYTG EAQQARRLEN YGEFIRAAYY VRYNAGREPY 
SQALSQRFAQ SIDRFLRHPH AFDQGREQVG AMKSLSLMVD NVKQLPLTMD AMILALHRFN 
RETAQDTQWV DGLNNLFRAM SGHVGNSEFY RYLAANTQHI DTLYRFALDN EWALETDAEF 
LVYNALRETG AY