| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1251 |
|---|
| Symbol | |
|---|
| ID | 5136570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1324290 |
|---|
| End bp | 1324898 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640532709 |
|---|
| Product | HAD family phosphatase |
|---|
| Protein accession | YP_001217195 |
|---|
| Protein GI | 147674141 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.000890892 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATCC GTAATGTGGT ATTTGATGTT GGTAATGTGA TCGTAAAATG GGCACCACAA
GACATTGCCC AACTGACGTT TGGTGAGGGA GAAGAGAGTG CCTTCATGGC AACGGCTGTA
TTTAAAAGTG AGTTCTGGCG CGATTTGAAT AAAGGAAAAT ACACTGAAGC GGAAGTGAAA
CGCGCACTCC ATCAGCAATT AGGACTTTCC TCTGACACTC TAGAACAACT CTTTTTCCAT
ATTAAAAATA CCCAAGTTTT GCTGCCCGGA ACCTTGCAAT TAATGGATGA TCTCCTCAAA
GCAGGTTATC GCCTCTACGC GTTGACCGAC AATGTGAACG AGATTGTCGC TTACTTAAAA
AAACAATATG GCTTTTGGCC CAAATTTACT GGCGCAGTAG TGTCGAGTGA GTGTGGTTTG
CTTAAACCTG ATCCGGCGAT TTACCAGCAT CTGGCAGACT CCCAGCGCAT TCTCCCGCAA
GAAAGTGTCT TTATGGATGA TATGCCAGCC AATGTCGAGG GGGCGCGCCA ACAAGGATTT
CATGCCATTC AATTTGTTGA TGCGCACCAA GCAAGAGTGC AGCTAGCGCA AATGGGGCTG
CACTTTTAA
|
|---|
| Protein sequence | MAIRNVVFDV GNVIVKWAPQ DIAQLTFGEG EESAFMATAV FKSEFWRDLN KGKYTEAEVK
RALHQQLGLS SDTLEQLFFH IKNTQVLLPG TLQLMDDLLK AGYRLYALTD NVNEIVAYLK
KQYGFWPKFT GAVVSSECGL LKPDPAIYQH LADSQRILPQ ESVFMDDMPA NVEGARQQGF
HAIQFVDAHQ ARVQLAQMGL HF
|
|---|
| |