| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1241 |
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| Symbol | |
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| ID | 5136508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1313445 |
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| End bp | 1314140 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640532699 |
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| Product | ribosomal small subunit pseudouridine synthase A |
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| Protein accession | YP_001217185 |
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| Protein GI | 147673094 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000000134561 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTTTAG ACAAATTCCT GTGTGATGCG CTCGGTACAA CGCGCAAAGA GGCCACTCAA
CTTCTCAAAA GTGGTGAAGT AACCGTCGAT GATGTGGTGC AAAAAAGCGG TGCATTCAAA
CTCAAAGAGA CGTCGTGCGT TGAGTGGCAA GGCCGTGAAA TTATGTTGCA TGGTCCGCGT
TACATCATGA TGCACAAACC AGATGGCGTG GTCTGCTCAC ATGAAGATGG TTTTAACCAA
ACGGCGTTTA CCTTGCTTGA TGAAGTGAAT GTTGAAGATT TGCACTTTGC AGGCCGCTTG
GATGTCGATA CCACAGGTTT ACTGCTGATC ACTGATGATG GGCAATGGTC GCACCGAGTC
ACGTCACCAA AACATAAGTG CGAGAAGACC TACCGCGTGT GGTTGGCGGA TCCCATTCAA
GCTGATTACG CAGAGCAATT TAACCGAGGT ATTGAATTGC GTGGTGAACG TGAGCTGACT
TTGCCTGCGC AACTGGAGGT GATCAGTGAA ACGGAAGTGC TATTGACCAT CCATGAAGGC
AAGTATCACC AAGTGAAGCG TATGTTTGCC GCTTTGGGTA ACAAAGTCAT AGGGTTACAT
CGTGAACGCA TTGGTCAGAT TACCTTAGAT GAAACCCTTG AACCGGGGGA ATACCGCTAT
TTGACGGAAG AAGAAGTGGC CTCAATCTGG AAATAA
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| Protein sequence | MRLDKFLCDA LGTTRKEATQ LLKSGEVTVD DVVQKSGAFK LKETSCVEWQ GREIMLHGPR
YIMMHKPDGV VCSHEDGFNQ TAFTLLDEVN VEDLHFAGRL DVDTTGLLLI TDDGQWSHRV
TSPKHKCEKT YRVWLADPIQ ADYAEQFNRG IELRGERELT LPAQLEVISE TEVLLTIHEG
KYHQVKRMFA ALGNKVIGLH RERIGQITLD ETLEPGEYRY LTEEEVASIW K
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