| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1240 |
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| Symbol | |
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| ID | 5136065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1311921 |
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| End bp | 1313126 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640532698 |
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| Product | bicyclomycin/multidrug efflux system |
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| Protein accession | YP_001217184 |
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| Protein GI | 147674586 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.000341384 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTACCT CAACCGTGAA TACCCAACAA ACACCGCAAA TGAGTTTGTT GCTTTATATT
GTGCTCGGTG CGCTCGGTGC GTTGACACCG CTGGCGATCG ATATGTATTT GCCAGCTATG
CCGACCATTG CCCGTGATTT CGGCGTTAAC GCTGGTGCGG TGCAAATTAC TCTAACTGCC
TATACGGCAG GCTTTGCCAT TGGCCAATTG CTGCATGGTC CGCTAGCCGA TAGTTATGGT
CGCCGTCCGG TGATGCTGTG CGGTATCTTC CTCTTTGGTA TTGCCGCTAT AGTGAGCGCG
ACGACCAATG GTATTGAAGC CTTAACCTAT ATTCGTGCCG CGCAAGGTTT TGCGGGTGCG
GCGGCGGCCG TGGTCATTCA AGCGGTGGTA CGCGATATGT TTGACCGCGA AGATTTTGCG
CGGGCGATGT CGTTTGTTAC TTTAGTGGTG ACTTTGGCTC CCTTGGTGGC GCCCATGATC
GGTGGGCATT TGGCGATTTG GTTTGGCTGG CGTTCTATCT TCTGGGTGTT GGCGCTGTTT
GCGGCACTCG TTATCGCGAT GGTGATGTGG AAAATCCCGG AAACACTGAG CCCTGAAAAT
CGTCAGCCGC TGCGTTTTCG TAGCACCATG CGCAACTATT TTGATTTGTG TAAAAACCCT
GTAGCTATGG GGCTGATTTT CTCTGGCGCA TTTTCGTTTG CGGGTATGTT CGCGTTTTTG
ACAGCCGGCG CGTTTGTGTA CATCGATATT TATGGTGTTA GCCCAGACGG TTTCGGATAC
CTGTTTGGCC TTAATATTGT CGCGATGATT GCGTTGACCA CGATCAATGG CCGTTTTGTC
AAAAAAATCG GCTCACACAA CATGCTACGC TTCGCACTCT TTTTACAGTT GATGGCGGGG
ATTGGTCTGT TTGTTAGCTG GGTTCTGGAT TGGGGATTAT GGGGAACCGT ACCATTCGTG
GTGTTGTTTG TCGGTACAAT CTCAACCATT GGCAGTAACT CGATGGGGTT GTTGCTGAGT
AAATACCCGC GTATGGCGGG AACCGCATCA TCATTAGCGG GCACATTGCG TTTTGGTACG
GGCTCAATCA TCGGCGCTGT CGTGGCAGCG TTGCCGGGTA CTGAAACATG GCCAATGATA
TTTGTGATGG CGGCTTGTTC TGTGTTATCA GGTGCCTTTT ACTGGACGTT AGGAAGAAAA
GCGTAA
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| Protein sequence | MSTSTVNTQQ TPQMSLLLYI VLGALGALTP LAIDMYLPAM PTIARDFGVN AGAVQITLTA
YTAGFAIGQL LHGPLADSYG RRPVMLCGIF LFGIAAIVSA TTNGIEALTY IRAAQGFAGA
AAAVVIQAVV RDMFDREDFA RAMSFVTLVV TLAPLVAPMI GGHLAIWFGW RSIFWVLALF
AALVIAMVMW KIPETLSPEN RQPLRFRSTM RNYFDLCKNP VAMGLIFSGA FSFAGMFAFL
TAGAFVYIDI YGVSPDGFGY LFGLNIVAMI ALTTINGRFV KKIGSHNMLR FALFLQLMAG
IGLFVSWVLD WGLWGTVPFV VLFVGTISTI GSNSMGLLLS KYPRMAGTAS SLAGTLRFGT
GSIIGAVVAA LPGTETWPMI FVMAACSVLS GAFYWTLGRK A
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