| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1237 |
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| Symbol | |
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| ID | 5136034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1308218 |
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| End bp | 1309594 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640532695 |
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| Product | hypothetical protein |
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| Protein accession | YP_001217181 |
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| Protein GI | 147673464 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0290804 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCTGTTG TCTCTCAAGT TTTATCCCAC ATGAGAGGGG ATTTCTTCCG CCGCTTGATC
GCGATTGCTC TGCCGATCAC GCTACAAAAT ATCATGTTCT CCAGCCGCGG TTTGGTCGAT
GTACTAATGC TCGGGCAACT GGGAGAGGCC GAAATTGCCG CCGTGGGTGT CGCGGCACGA
GCGACCTTTG TGACTACGAT TATGCTGGTG GGCGTGACCA CAGGCGGCGC ACTGCTCACG
GCGCAATATT GGGGGGCGGG CGATCGCAAA GGTGTGCGTG AAAGTACGGC ACTGACTTGG
TTAGTCTCTA ACTTCTTTGC CTTTTTCACG GTATTGCTGT TCCTGTTTTT CCCACAGCAA
ATCATGTCGT TAACGACCGA TTCGGAGCAA GTTAATGCGC TGGGTAGTCA ATATCTGATC
ATCACCTCGT TCACTATGTT TGCGGTGGCT TGTGTCAGCA GTATGGCAGT CGGACTTCGC
GCGATGCACA AGCCCGGGGT AAGCACGTTT TTCAGCGGTA TCGGCATTGT GTCTAACGTG
GTACTGAACT GGATCTTAAT TTTCGGTAAA TTTGGATTCC CAGCGATGGG TATTCAAGGG
GCGGCGATTG CCACCGTGTT GAGTGGCGCG ATTGAAATTG CTTGTTTGTA CAGTTACTTG
TATGGCAAAA AACATTTGAT GGCCTTTGGC TGGCAAGACA TCAAAGCGGT AATTGATTGG
CCGAAAATTA GCCGTTTTCT ACGTTTGTCA TTACCCACCA CCTTTAACTT TCTGATCTGG
GCTGCCGGTT TATTTACCTA CCACGCTATC ATGGGGCAGA CGGGGGTTCA GGGGCTTGCT
GCGCTATCCG TCATGACTCC GGTTGAATCG ATTTCCCTGA GTTTACTGAT TGGCATGTCT
ACTGCGGCGG CCGTCTTGGT GGGCAATCAA CTTGGCGCGA AAAACTATGA AGCGGTGTAC
TACCAAGCGA TAGGTGTAAC CGCATGCAGT GTGCTGGTCG GTATTGTTGT CGCGATTGGT
CTGTATCTGG TGCAAATTCC GGTGCTTGGT GCGTTTACGG CGTTAACGCC TGAAACGCGC
GAGTTATCAG AAAAATTCAT GCTGATCTTG TGTTTAGGTA TCGTGCTGCG TTCATTCCCG
ATGACCGCGA TCGTTGGCGT GTTGCGCGCG GGCGGCGATG TAAAATTCTG TCTCGGCCAA
GACATCGTCG CGCAGTGGTG TATTGGTATC CCGTTAGCCG CCTTTGCTGC GCTAGTGTTA
AAGGTCGAAC CGGAGTGGAT TTACCTGCTG TTTTTGACTG AAGAAGTGGT GAAGTGGTTT
GGCTCACTAC ATCGCATGAA AAGCAAGAAG TGGATGAAGA ATTTGATTGA AAATTAG
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| Protein sequence | MSVVSQVLSH MRGDFFRRLI AIALPITLQN IMFSSRGLVD VLMLGQLGEA EIAAVGVAAR
ATFVTTIMLV GVTTGGALLT AQYWGAGDRK GVRESTALTW LVSNFFAFFT VLLFLFFPQQ
IMSLTTDSEQ VNALGSQYLI ITSFTMFAVA CVSSMAVGLR AMHKPGVSTF FSGIGIVSNV
VLNWILIFGK FGFPAMGIQG AAIATVLSGA IEIACLYSYL YGKKHLMAFG WQDIKAVIDW
PKISRFLRLS LPTTFNFLIW AAGLFTYHAI MGQTGVQGLA ALSVMTPVES ISLSLLIGMS
TAAAVLVGNQ LGAKNYEAVY YQAIGVTACS VLVGIVVAIG LYLVQIPVLG AFTALTPETR
ELSEKFMLIL CLGIVLRSFP MTAIVGVLRA GGDVKFCLGQ DIVAQWCIGI PLAAFAALVL
KVEPEWIYLL FLTEEVVKWF GSLHRMKSKK WMKNLIEN
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