Gene VC0395_A1233 details

Gene Information

• Locus tag: VC0395_A1233
• Symbol: nhaA
• ID: 5136279
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 1302441
• End bp: 1303589
• Gene Length: 1149 bp
• Protein Length: 382 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640532691
• Product: pH-dependent sodium/proton antiporter
• Protein accession: YP_001217177
• Protein GI: 147674219
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG3004] Na+/H+ antiporter
• TIGRFAM ID: [TIGR00773] Na+/H+ antiporter NhaA

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000000000535639
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGACA TGATTCGAGA TTTCTTCAAG ATGGAATCTG CGGGGGGCAT TCTGCTGGTG 
ATTGCGGCGG CGATTGCTAT GGTCATTGCC AATTCAGCAA TGGGTGAAGG GTACCAAGCA 
TTTTTACATA CCTATGTCTT TGGTATGTCG GTTTCACACT GGATTAATGA TGGCCTAATG 
GCGGTGTTTT TCTTATTGAT CGGTTTAGAG GTCAAACGTG AACTGCTGGA AGGAGCGCTG 
AAATCCCGTG AAACAGCGAT TTTCCCTGCG ATAGCGGCGG TAGGCGGTAT GCTCGCTCCT 
GCATTAATCT ATGTAGCCTT CAATTTTAAC GATCCGGCTG CCATTCAAGG TTGGGCGATT 
CCTGCGGCCA CCGATATTGC GTTTGCGCTC GGGATCATGG CGCTACTGGG TAAGCGTGTG 
CCTGTGAGTT TGAAAGTGTT TCTGCTGGCG CTGGCGATCA TTGATGACCT TGGCGTAGTA 
GTGATCATCG CTCTGTTTTA CAGCAGTGAT TTATCAACCA TTGCACTCAC TATCGGCTTT 
ATCATGACGG GTGTGCTGTT TATGCTTAAT GCCAAGCACG TTACTAAATT GAGTATTTAT 
TTGGTGGCAG GCCTCATCCT ATGGATCGCC GTATTAAAGT CGGGTGTCCA CGCCACATTG 
GCTGGAGTAG TGATCGGATT TGCTATTCCG CTGAAAGGCA ATAAGGGTGA GCATTCACCG 
TTGAAACACC TTGAGCATGC ACTGCATCCT TATGTTGCCT TTGCGATTTT ACCTGTGTTT 
GCTTTTGCCA ATGCTGGTAT CTCACTGCAA GGCGTGTCAT TAGCAGGGCT TACTTCTATG 
CTGCCACTGG GTGTAGCACT GGGTCTGTTC CTTGGTAAAC CACTCGGCAT CTTTAGCTTC 
AGTTGGGCTG CGGTTAAACT CGGGGTAGCA AAACTGCCAG AAGGGATCAA CTTCAAGCAT 
ATTTTTGCAG TATCGGTACT GTGTGGCATC GGTTTTACTA TGTCGATCTT CATTTCATCA 
CTGGCCTTTG GTCAAGCGAA TGAAGCTTAT GATACTTATG CGCGCTTAGG TATTTTAATG 
GGGTCAACCA CCGCGGCATT ACTTGGTTAT TCTTTACTAC GACTCTCTCT GCCGCTCAAA 
AAAGCGTAA 

 

Protein sequence

MSDMIRDFFK MESAGGILLV IAAAIAMVIA NSAMGEGYQA FLHTYVFGMS VSHWINDGLM 
AVFFLLIGLE VKRELLEGAL KSRETAIFPA IAAVGGMLAP ALIYVAFNFN DPAAIQGWAI 
PAATDIAFAL GIMALLGKRV PVSLKVFLLA LAIIDDLGVV VIIALFYSSD LSTIALTIGF 
IMTGVLFMLN AKHVTKLSIY LVAGLILWIA VLKSGVHATL AGVVIGFAIP LKGNKGEHSP 
LKHLEHALHP YVAFAILPVF AFANAGISLQ GVSLAGLTSM LPLGVALGLF LGKPLGIFSF 
SWAAVKLGVA KLPEGINFKH IFAVSVLCGI GFTMSIFISS LAFGQANEAY DTYARLGILM 
GSTTAALLGY SLLRLSLPLK KA