| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1232 |
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| Symbol | |
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| ID | 5135738 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1298958 |
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| End bp | 1301843 |
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| Gene Length | 2886 bp |
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| Protein Length | 961 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640532690 |
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| Product | aminotransferase, class III/decarboxylase, group II |
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| Protein accession | YP_001217176 |
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| Protein GI | 147674813 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins
[COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
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| TIGRFAM ID | [TIGR00709] 2,4-diaminobutyrate 4-transaminases |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000122861 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTACAG CCTTTGAAGT CGATAACCAC ATCGCAACTC TGTTTTCAAC TCAAGTGCCG
TTGCTAGACG GTCTTTACGA TCTCACTCCA GACCAAGTGC TGCTCGATCA AGCTGCGCAT
GAATCTGAAG TGCGTTCTTA TCCACGCCGT ATTCCTATTG CCATTAAGCA AGCCTATGGC
TGTTTGGTGG AAGATACGCG TGGGCAGATT TTCTTGGATT GCTTAGCCGG TGCAGGTACT
TTGGTGCTCG GTTATAACCA TCCAGAAATC AATCAAGCAC TGAAAGCACA ACTCGACTCT
GGTCTGCCAT ACCAAACTCT GGATATTGCA ACCGAAGCGA AAACCCATTT CATCAAGACC
GTGAAAGGCT TTTTGCCTAA GGCCTTGGGT GAAGATTGTG TGATCCAGTT CTGTGGCCCA
TCGGGTGCCG ATGCGGTTGA GGCTGCAATT AAGCTTGCCA AGCAAACCAC GGGGCGTAAC
ACCATGTTTG CCTTCCGTGG TGCCTGCCAC GGTATGACTA ACGGCACGAT GGGGATGATG
GGTAACCTCA ATACCAAAGC GCGCCGTACG GGCTTGATGT CTGATGTGCA CTTTATGCCT
TTCCCGTACA GCTTACGCTG TCCGTTTGGT TTAGGGGGTG ATGAGGGTGC GAAAGCCAGT
ATCCGCTACA TCGAACGTCT GCTGAATGAT GATGAAGCGG GGATCATGAA ACCTGCTGCG
ATCATCGTTG AACCCGTACA AGGTGAGGGA GGTGTTATCC CTGCGCCAGC ATTCTGGTTG
CGCGAACTGC GCCGCATTTG TGATGAGCAC GGCATCCTGT TGATCTTTGA CGAAATCCAA
TGTGGTGTAG GCAAAACAGG CCACAACTTT GCATTTGAAG AGTCCGGCAT TATTCCTGAT
GTACTTTGCT TATCAAAAGC GATCGGCGGC GGTTTACCCA TGTCGATTCT GGTTATCAAC
AAAAAACACG ACACATGGCG TCCGGGTGAG CATACCGGAA CCTTCCGTGG CAACCAGCTT
GCAATGGTAT CTGGCGCTAA AGCGCTTGAA ATCATTCAGC GTGATAACCT CGTTGAGCAT
GCGCGTATTG CGGGTCAATA CCTACGCGCT GGCCTAGAAA AAATCCAAAG CCGAGTCAAC
TGTGTTGCCG AAGTACGTGG AAAAGGCTTG ATGCTCGGTC TTGAGATTAA AGATCCAAGC
GGCGAACTGA ACAAGTTTGG TGAGCCAAAA TCAGCACCAC AACTGACACT GGCAATTCAA
CGTGCGGCAC TTGAGCGCGG CTTGATGGTA GAAAAAGGCG GCCGTGATGG TTCCGTGATT
CGTTTCTTGC CACCAGTCAT CATCTCGTTT GAACAGCTCG ATTTCGCGTT ACGCGTGCTT
GAAGAGGCGA TTCTTGCTGC AGGCGGCGGC AAAAAAGATC CTGAGCAAGT TAATCAAGAG
TGGAAAAAAC ACTTTATTCA CACTGGCCAC ATGGGCAGCC AAGAGTTCTC ACAAGTGATG
AACCATACGA CCGCTGCGAT GAAAGCCGTG TTTGAAGAGG TGAAAGCACC CTATTCAGGC
CTTGATCCTA AAGTGCTGGA AGAAGCGATT TACGCGGTGG ATCTGGATAA CAAAAATGCG
TCACTAAAAG AAGTTATCTC TGAAACCGCA GAGTTGATCG CGAAGAACTC CATCATGGTT
CAACACCCTG ACTGTATTGC GCATTTGCAC ACGCCACCCT TAATGCCTTC CGTTGTTGCT
GAAGCCATTA TTGCGTCATT GAACCAATCC ATGGACTCAT GGGATCAATC TTCTGCAGCA
ACCTTTGTTG AGCAGAAAGT GGTGGATTGG ATGTGTGAAA AGTATGAACT GGGCGCGCAA
GCGGACGGTA TTTTCACCAG CGGTGGCACG CAAAGCAACC AGATGGGCTT AATGCTGGCT
CGTGACTGGA TCGCCGATAA GCTCAGTGGC CATTCAATCC AGAAATTGGG TCTACCTGAG
TATGCGGACA AACTGCGTAT TGTGTGCTCG AAGAAATCTC ACTTCACGGT ACAAAAATCG
GCATCTTGGA TGGGCCTCGG TGAGAAAGCC ATTCTTGCTG TTGACGCTCT ACCTAATGGC
ACGATGGATG TGACTAAGCT TGAAGCTGCG GTTGAACAAG CCAAAGCTGA AGGGCTTATT
CCCTTTGCCA TTGTGGGTAC CGCAGGCACT ACCGACCATG GTGCGATTGA TGATCTGGTG
ACGATCGCCG ATGTGGCTGA GAAGCACGCA CTGTGGATGC ACGTGGACAG TGCCTATGGT
GGCGCACTGA TCCTGAGCAG TCATAAAGAT CGCCTCAATG GCATCGAGCG CGCTCAATCC
ATCAGTGTGG ATTTCCATAA GCTGTTTTTC CAAACCATTA GCTGTGGCGC ATTGCTGCTC
AAAGACAAGC ATAACTTTAA GTATCTGCTG CACCATGCAG ATTACCTAAA CCGTGAGCAC
GATACGCTGC CAAACCTAGT CGATAAATCG ATTTCGACTA CTAAACGTTT TGATGCCCTA
AAAGTGTTTA TGACCATGCA AAACGTGGGA CCTAAACAAC TGGGCGCCAT GTACGATCAC
CTGCTCGCTC AAACATTGCA GGTGGCGGAA CTGGTACGTC AGCATCAAAG CTTTGAGCTT
TTAGCTGAGC CATCTTTGTC TACCGTGTTA TTCCGCGCGG TAAATGAACA AGCTGCTGAT
CTGGATGAAT TGAACAAAGC CGTTCGTCTA CAGGCGCTGG TACGTGGTGT CGCTGTGCTT
GGCGAAACCA TAGTGGATGG CAAAACGGCC TTAAAATTCA CAATCTTGAA CCCATGCTTG
ACGATGTCGG ATTTCGACTC TCTACTGGCT AAAATTGAAG CTCTAGCTGC TGAGCTAGCG
AACTAA
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| Protein sequence | MSTAFEVDNH IATLFSTQVP LLDGLYDLTP DQVLLDQAAH ESEVRSYPRR IPIAIKQAYG
CLVEDTRGQI FLDCLAGAGT LVLGYNHPEI NQALKAQLDS GLPYQTLDIA TEAKTHFIKT
VKGFLPKALG EDCVIQFCGP SGADAVEAAI KLAKQTTGRN TMFAFRGACH GMTNGTMGMM
GNLNTKARRT GLMSDVHFMP FPYSLRCPFG LGGDEGAKAS IRYIERLLND DEAGIMKPAA
IIVEPVQGEG GVIPAPAFWL RELRRICDEH GILLIFDEIQ CGVGKTGHNF AFEESGIIPD
VLCLSKAIGG GLPMSILVIN KKHDTWRPGE HTGTFRGNQL AMVSGAKALE IIQRDNLVEH
ARIAGQYLRA GLEKIQSRVN CVAEVRGKGL MLGLEIKDPS GELNKFGEPK SAPQLTLAIQ
RAALERGLMV EKGGRDGSVI RFLPPVIISF EQLDFALRVL EEAILAAGGG KKDPEQVNQE
WKKHFIHTGH MGSQEFSQVM NHTTAAMKAV FEEVKAPYSG LDPKVLEEAI YAVDLDNKNA
SLKEVISETA ELIAKNSIMV QHPDCIAHLH TPPLMPSVVA EAIIASLNQS MDSWDQSSAA
TFVEQKVVDW MCEKYELGAQ ADGIFTSGGT QSNQMGLMLA RDWIADKLSG HSIQKLGLPE
YADKLRIVCS KKSHFTVQKS ASWMGLGEKA ILAVDALPNG TMDVTKLEAA VEQAKAEGLI
PFAIVGTAGT TDHGAIDDLV TIADVAEKHA LWMHVDSAYG GALILSSHKD RLNGIERAQS
ISVDFHKLFF QTISCGALLL KDKHNFKYLL HHADYLNREH DTLPNLVDKS ISTTKRFDAL
KVFMTMQNVG PKQLGAMYDH LLAQTLQVAE LVRQHQSFEL LAEPSLSTVL FRAVNEQAAD
LDELNKAVRL QALVRGVAVL GETIVDGKTA LKFTILNPCL TMSDFDSLLA KIEALAAELA
N
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