| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1227 |
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| Symbol | |
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| ID | 5136831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1287036 |
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| End bp | 1293791 |
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| Gene Length | 6756 bp |
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| Protein Length | 2251 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640532685 |
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| Product | cadherin domain-containing protein |
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| Protein accession | YP_001217171 |
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| Protein GI | 147675379 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | [TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAATTC ATGCTTTGTT GTCTTTAACA AATCTAGCAG CAAATCAGCT GCTCGTGATT
GATAAAAACG GAAATATCGC GATCATCAAC GCAGGAGAGG CGGTTCCTGA AGGTGCGATT
ATCCTCGACC CGAATAGTAA CAATTTGATG CCTGAGCAGG AGCCACTGCC CGTAGCACAA
CTGGTGGATG CTGAGGGTAA CGTCCAGCCG ATCACCGACG ATATAGAGCA GATTTTAGCC
GCATTAGAAG AAGGCGCAGA CCCGACTGCA CTAGATGATC TCGCCCCAGC AGCAGGTGGC
CTTCAAGGGT CATCCATCAC GGGTAGCGCC TCCATTGAGC GTGATGGTGC TGAAACCATC
GCGTCAACAC AATTTGATAC ATCCGGCTTC GAAGCCATTG GCCTATCAAG AACGCAAAGC
TTGAGTTTGC TGAACCTACT GCAAGCTCCT ACGGCTCCAA TTACCCCTAT TCCACCAGTT
GATCCAGAAG AGCCTGCCTC TCCCATTGTA ATTAGCAGTA TTACAGGCGA TAACGCAGCC
GAAGGTAGCA ACAATACCTT TTCCGTGAGC CTATCAGGTA CTACTGCCGC GGAAACTACA
ATTGTGCTGA CACTGGCTGG TGACACTGCG ACCAAAGGTG TCGATTTCAA TGGTACGTCA
GTTATTGTCG TTATTAATGG TGTGAGCCAG ACAGTGCCAG TTAATGAAGA TGGCACCTTC
CAAGTAACAG TGCCGACCAA TACAAACAGC TTTAGCGTTC AAGTCTCTAC CATTGATGAC
AATATCTACG AAGGAAATGA GACCTTCACC CTAAGTGGTG CGGGCACAAA TAGCATAGTC
ACAGGTACAG CGACCATCAC TGATGATGGC AGCAACGGCG GCACAGACGA CAGCCCAGTA
GTAAATGGCA TCAGCAGCCC AACCGTATCA GAAGGGGAAA GCGCAACGTT TGACGTTAGC
CTGAGCAACG CCAGCACAAC AGCGACCACC GTCACTTTGA CATTGGCGGG TGGCAGCGCG
ACTGCAGGCA CAGACTTCAC CAGTAGCGAA GTGACCATCA CTTATCAAGA TGGCACCACA
CAAACCGTGG CCGTCAATGG CGATGGTTCT TTCGAAGTGG CGATCCCAGC GGGTGACACC
ACGTTCAGTA TCTCGGTTCA AACCACCGAC GATAACGTAT ATGAAGGGAG CGAAAGCTTC
ACACTGAGCG GAAAGACCGC GACTCAAGGG ACGGCGATTA CCACGACCGG AACCATCGTC
GACAACGACG AGGTACCGAC CATCAAGTCG ATCGGCACCG GCGATGTGAC CGCGACCGAA
GGCGACGCGC TGATCTTCAC GGTGAAACTG AGCAATGTCA GCAGCACCAG CACGTCCTTC
GACTTCCTGC TGCAAGATGG CACCGCCACG TCCGACGACT ACGGTGCGGC CAGCTTCAGC
AACGGTGTGA CCTACGACGC CAGCACCGGC AAGATCACCG TGCCGACTGG CGTGACCAGC
TTCACCGTCA ACGTACCTAC TACCAACGAC AGCATCGAGG AAGCCGACGA AACCGTCAAG
CTGACCATCG GTGGCAAAGA GGCGATCGGC ACCATCGTCG ATAACGACAA CGCGCCGGTC
ATCGACGACG CGACCGTGAA TAACTTGTCA GAGAGCATCG CGAACGGCAC CGAAGTGTAC
GACGTACATG AAGCGCGCAC CGGCAACGAC ACCGACCTCG ATGGTGAAGC ACTGCAATAC
ACCTTCGTGC ACAGCAACAA CACCCGTAGC ACTACTAGTG AAGACGGTGC GTTCAGCATC
GATCCAGGCA CCGGTAAGAT CACCGTGCTG GATACCACGA AGTTGGATTA CGAGAGTGCC
ACGTCAATCG TCCTGAAAGT CGAAACGACT GACGGCGTGA ACAAAGACAC TGCAGACATC
ACACTCAACC TGACTAACGT CAACGACAGT GACACGGTCT TCACCAAAGA GAGTGAGACG
TTCAACTATG CGGAAGGCAC GGCGGCGGGT GTAACGCTGG GCAAAGTCAC AGCGACCGAC
GCCGATGGCG ACAGCATCAG TTACAGCATC GCGCAAGAGC ACAACGTGTA CGCGGCGGAT
GATGTGAATA AAGAGCGTCC GTTCTACCAG GTGGATGCGA ACGGCAATGT GAGTCTGACC
GAGGCGGGTG AGAAAGCGTT CACCAACGAC TACGAGTCTG GCCGAAACAC GCACACCATC
ACGGTGACGG CGACGGGCAC AGACGGTTCG GGCGCGGACA CCACAGACAC CATCGAGGTG
ACGCTGAACG AAACCAACAT CGATGACAAC GCACCGAAGT TTGAAGGCAC CACCGACGGT
GAGTACAGCT TCAGCTACGA CGAAAACAGC GCGGCGGACA CCGTACTGGG CACGGTCAAG
GCCACCGATG CGGATAAAGA GACGGTGACC TACAGCATCA AGTCAGGCAA CGACAACGGC
TGGTTTGCGA TTGATGCGAC CACGGGCGTG ATCACCCTGA CTGCGAAAGG TGCAGAGGCG
GCGGCGAACG ACTTTGAGGC GCTGGCCAAC GTGCACAGCT TGGTGGTGAC TGCGACCGAA
GACGCAGGTC TGGGTGGCGT GAAGACCACC GACATCACAG TCAAGCTCAA CGAGCAGAAC
CTCGATGACA ACGCACCGAA GTTTGAAGGC ACCACCGACG GTGAGTACAG CTTCAGCTAC
GACGAAAACA GCGCGGCGGA CACCGTACTG GGCACGGTCA AGGCCACCGA TGCGGATAAA
GAGACGGTGA CCTACAGCAT CAAGTCAGGC AACGACAACG GCTGGTTTGC GATTGATGCG
ACCACGGGCG TGATCACCCT GACTGCGAAA GGTGCAGAGG CGGCGGCGAA CGACTTTGAG
GCGCTGGCCA ACGTGCACAG CTTGGTGGTG ACTGCGACCG AAGACGCAGG TCTGGGGGGC
GTGAAGACCA CCGACATCAC AGTCAAGCTC AACGAGCAGA ACATTGATGA AGAGCTTAGT
ATTTCAGGGT TGAATGGAGC TAATGCTGAG TTAACTATCC ATGAATCTAA TCTTTCAGGT
GGTTCGTCGC CAGATCACTC TGCTCTTAGC AAAGTTGGGA GTTTCAGTTT TACTTCTATT
GACGGCTTAG CGTCTTTAGT AATCGCGGGT CATAGTTTTA ATGTGGCAGA ACTTCTTGCG
TTGAATTCAT CTGAAGCAAC AATTTCAACG CCTTATGGTG AACTCACCTT GACGGGGTTC
AGTGGTGATC TCACTGGTGG AACAGTTCAA TACGAATATA CGTTGAACGA AAATGTGGAT
AACGATTCAG CCACCAATGC AAATGACACG GACTATACCG ATCATATCTC TGTGACTGTG
ATTGATGTGG ATGGCAGCCA GATCACAGAT AGCTTAGACG TTAAAATTGT TGATGATGCT
TCTACGGCTC TTGATGACCG TGGTGAAGTG GACATTGTTG TTGACAGTTT CACGGTCTCT
GGTGTGGTTG CTAACTGGAC ATCATGGAGT AATGGTACCA ACGTAACCAC GTTTGATGGA
ACTAATGCAC CAAATGGTGG TGGCTTAGAT AATGACAGTG GCAAAGACCA AATCCGTTGG
GGTCAACCCG CTAGCTCATA CAGCTCTGGC TACGGATTTA TCGATAATGA TAGTGCGCTA
AACGGTGAGT TTGCCTTAAA CCAAGATATT ATTTTGGGTA CTTTTACTCA TTACAATTAT
CCCGTTTATT CAGGTGGTGC GATTACCAGT GCCAGTATGG ATGTTGCGTT CTCAGTGACA
GATGCCCACG GCGTACTTAC ACCTGTAACG TTGAAACTGA ATTTTGATCA CAATGAAACG
CCAAATACCA ATAATCCAGA AGCCTCAAAA GACATCATTA AAGTTGGTAA TACCAATGTG
ACTTTTGAGA ATGCAGGGGC TCTCTATACC TTGCAAGTGA TTGGCTTTAG GATTCCTGGC
ACCAATCAAA TTGTGACGGA AATTAGAACG GGTGAAAACG CAACTAACAG CTATGAATTG
GTTGTACGTG TTGGACCTGG TGAGGGGTAT GAATTGCCAT CCACATCAGG CAACGTATTA
TCCAATGATG TTTCTGGGGC AGATGTCGAT ATGACGGTTG TCGGAGCAGC CTCTGGTAAT
CACGTGAGTT CCGGTGTCTC AGGCAGCGTT GGATCTATGA TTGCGGGCCT GTATGGCAAT
TTGATCCTGC TCGCTGATGG TAGCTACACA TACCAAGTGA CAGCGAATGC ATCTTCGATT
CCTAATGATG CAATCGAGAT TTTCACTTAC ACCATGAAAG ATGGTGATGG TGATACCTCA
ACTGCGTTAC TTTCTATCAA TGTGAACCGA GTTACGATGG CGGATTTCAA TGCTAACCAA
GATCACAAGG TTGGTTTGGA AGACACCGTG GTGGCCGGTA ATGTGTTAGA CAATGATGGA
AGCAAAAATA CCTCAGTGGA TCATTTCACG GTAGGTAATG ATGCCACTTC TCACGTGGTG
GGTAGCCCTG TTAGCTTAGA GCAAGGTGAG CTGACGCTTA ATTCGGATGG CAGTTACACA
TTTAAGCCAG CAGATAACTG GAATGGTGAA GTTCCGGTTA TTACCTACAC AACCCACACT
GGAAAAACGA GCACACTCGC CATCACCATC ACCCCTGTTG ATGATGCGAC GGTTACTCAA
CCTGATCATA AGTCGATTGC AGAAGATACT ATTGCGACGG GTAATGTGCT GGCCAACGAT
TGCGATATAG ACAGCGCTCT CTCAGTCACC AGCTTCCATG TTGAGGGAGT CAATGGTGTT
TATACCGCTG GTAATACGAT GTATCAGCTG GCTGAAGGTA CTTTAGTGCT TAAGGCAAAT
GGTGATTATA CCTTTGATCC AAAAGATAAC TGGAGTGGCT CACTACCAGA AATTACCTAT
ACCACCAATA CCGGAGCAAC TGGAACTCTG AACATTCATG TTGAGGCGGT GGCTGATGTG
CCGAACCTGA CTATCAATGG CTATACCTCT GTTGCTGCAA TCAATTTCGA GGATGCGAGA
TTGAATGGCA GTTGGGATGG CGTGGTTGCT AATCAGATTA AAGGTCTGAA CACGATTGGA
ACGTGGCATA CCAGCAATAA TAGCGGTAAA GTTGAAATCG GTTACGAAAA TATCTATGTC
TCCGGTGGTT CTTCAACAAA TAAAGTCATG GAAATTGAGT TCAATAACGG TGACAAGACG
CTGTATACCG ATATTCATGC TCAAGCGGGT CGTTTTTATG AGCTAGATTT TGATATTGCA
GCTCGTGCTG GTTCTGTGAA CAGTTCAGGT TTAACCATTA AGCTTGTTCC TCTGAATGCT
TACGGTGTTC CTATCCTTGC CGAGGCGATC ACTCTTTATG ATTTCAATCC AACCAATGCG
AACTGGTTGA GAGATCAAAA AGTTACGCTC CCTATTGATC AAACTGGGGA ATATCGTCTG
TTGTTTGAAA GCGATGATGC TAATAGCTAT GGGGCGATTT TAGATAATTT GGCGTTTAAA
GTTGTTGATA ATATGGGCTA CCGCGGAGAT TTCATTAAAC TGAGTGAAAT TTCCACTTCA
CTGAATGATA CCGATACCTC TGAAACCTTG AGTCTTAAAT TAAAAGGAAT GCCAGAAGGG
TCGATCTTGA AAGACGATAA AGGTCATGAA GTTACAGTGG GTTCAAACGG TGAGGTAGAT
ATTACAGGAT GGGATTACAG CAGCTTACAA ATTAAAACGC CGAACCATGG TAATTTCAAT
ATTACTGTTG AAGCTACGGC GACTGAAAGC AGTAACCAAG ATAGTGCAAC GACGAGTGCG
ACAATTCCGG TCACGGTATT ACATCCTAAT GAGTATTTGG GACGTGGCGG TGTTGACTCT
TTCTTGTTGA CCAAAAGCAA TGGCGATAAT GCTAACTTAA ATATTGCTCT CAATGCTTAT
TATGAAGGCA CCACAGCGGT CGCACCTGTG ACGCAACAAG TAGCAGTAAC GATTGATACG
GACTTGGTGA TTCATTCAGG AAATAGTAAC GATTATATCG ATTTAGGTAT TAGTCGCGCG
GATAATACGG TTTATACCGG TAGCTCAATT CCTAACTTTA ATAATTCCAC GCCGTCACAA
TCTACACTGG CGGATAGCGC GTTTATGAAA AATGACGTGA TTACTGATCA TGATGGTGTG
TTATTACAAT CGGTACAAAG CCAAATTCAG CCGATCACTG ATACGGTGAA TTTAGGTAGT
GGTAACGATA CAGTTTATGG CGGAGGTGGA AACCTTGCCG CTTATGGCGG AGCGGGTAAT
GACACTCTGA TTGGCGGTGA TGGCAACGAT GCACTCAGAG GTGGTGCGGA TAATGACTAT
CTTTCAGGAG GTCGTGGTAA TGACGTTTTA CGTGGTGATT CAGGCAATGA CGTTCTTATT
GGTGGTCTTG GCCATGATAT TTTAACCGGT GGCTCAGGAG AAGATCTCTT CAAATGGGTT
GATGGAGATC TGGATGGAAG TACAGATCGA ATTACTGATT TCCATTTATC TGAGAAGGAT
AAGATTGATT TAAGTGATTT GTTCGATAAT CCATCAGAGC AAGAGGTGAC GGCACTATTG
GATAGCATTA AATCAACGGT GCAGGGTGAT GATCATTCAT CGTCATTCAA AGTAGAGAAA
AATGATGGTT CTTCGGTGAC AATTCAATTA GATGGCGTGT CGTCCGTTGA ACTTATTAAC
AACCTAGCAT CTATAATTCA GATTAAAGAA GACTAG
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| Protein sequence | MGIHALLSLT NLAANQLLVI DKNGNIAIIN AGEAVPEGAI ILDPNSNNLM PEQEPLPVAQ
LVDAEGNVQP ITDDIEQILA ALEEGADPTA LDDLAPAAGG LQGSSITGSA SIERDGAETI
ASTQFDTSGF EAIGLSRTQS LSLLNLLQAP TAPITPIPPV DPEEPASPIV ISSITGDNAA
EGSNNTFSVS LSGTTAAETT IVLTLAGDTA TKGVDFNGTS VIVVINGVSQ TVPVNEDGTF
QVTVPTNTNS FSVQVSTIDD NIYEGNETFT LSGAGTNSIV TGTATITDDG SNGGTDDSPV
VNGISSPTVS EGESATFDVS LSNASTTATT VTLTLAGGSA TAGTDFTSSE VTITYQDGTT
QTVAVNGDGS FEVAIPAGDT TFSISVQTTD DNVYEGSESF TLSGKTATQG TAITTTGTIV
DNDEVPTIKS IGTGDVTATE GDALIFTVKL SNVSSTSTSF DFLLQDGTAT SDDYGAASFS
NGVTYDASTG KITVPTGVTS FTVNVPTTND SIEEADETVK LTIGGKEAIG TIVDNDNAPV
IDDATVNNLS ESIANGTEVY DVHEARTGND TDLDGEALQY TFVHSNNTRS TTSEDGAFSI
DPGTGKITVL DTTKLDYESA TSIVLKVETT DGVNKDTADI TLNLTNVNDS DTVFTKESET
FNYAEGTAAG VTLGKVTATD ADGDSISYSI AQEHNVYAAD DVNKERPFYQ VDANGNVSLT
EAGEKAFTND YESGRNTHTI TVTATGTDGS GADTTDTIEV TLNETNIDDN APKFEGTTDG
EYSFSYDENS AADTVLGTVK ATDADKETVT YSIKSGNDNG WFAIDATTGV ITLTAKGAEA
AANDFEALAN VHSLVVTATE DAGLGGVKTT DITVKLNEQN LDDNAPKFEG TTDGEYSFSY
DENSAADTVL GTVKATDADK ETVTYSIKSG NDNGWFAIDA TTGVITLTAK GAEAAANDFE
ALANVHSLVV TATEDAGLGG VKTTDITVKL NEQNIDEELS ISGLNGANAE LTIHESNLSG
GSSPDHSALS KVGSFSFTSI DGLASLVIAG HSFNVAELLA LNSSEATIST PYGELTLTGF
SGDLTGGTVQ YEYTLNENVD NDSATNANDT DYTDHISVTV IDVDGSQITD SLDVKIVDDA
STALDDRGEV DIVVDSFTVS GVVANWTSWS NGTNVTTFDG TNAPNGGGLD NDSGKDQIRW
GQPASSYSSG YGFIDNDSAL NGEFALNQDI ILGTFTHYNY PVYSGGAITS ASMDVAFSVT
DAHGVLTPVT LKLNFDHNET PNTNNPEASK DIIKVGNTNV TFENAGALYT LQVIGFRIPG
TNQIVTEIRT GENATNSYEL VVRVGPGEGY ELPSTSGNVL SNDVSGADVD MTVVGAASGN
HVSSGVSGSV GSMIAGLYGN LILLADGSYT YQVTANASSI PNDAIEIFTY TMKDGDGDTS
TALLSINVNR VTMADFNANQ DHKVGLEDTV VAGNVLDNDG SKNTSVDHFT VGNDATSHVV
GSPVSLEQGE LTLNSDGSYT FKPADNWNGE VPVITYTTHT GKTSTLAITI TPVDDATVTQ
PDHKSIAEDT IATGNVLAND CDIDSALSVT SFHVEGVNGV YTAGNTMYQL AEGTLVLKAN
GDYTFDPKDN WSGSLPEITY TTNTGATGTL NIHVEAVADV PNLTINGYTS VAAINFEDAR
LNGSWDGVVA NQIKGLNTIG TWHTSNNSGK VEIGYENIYV SGGSSTNKVM EIEFNNGDKT
LYTDIHAQAG RFYELDFDIA ARAGSVNSSG LTIKLVPLNA YGVPILAEAI TLYDFNPTNA
NWLRDQKVTL PIDQTGEYRL LFESDDANSY GAILDNLAFK VVDNMGYRGD FIKLSEISTS
LNDTDTSETL SLKLKGMPEG SILKDDKGHE VTVGSNGEVD ITGWDYSSLQ IKTPNHGNFN
ITVEATATES SNQDSATTSA TIPVTVLHPN EYLGRGGVDS FLLTKSNGDN ANLNIALNAY
YEGTTAVAPV TQQVAVTIDT DLVIHSGNSN DYIDLGISRA DNTVYTGSSI PNFNNSTPSQ
STLADSAFMK NDVITDHDGV LLQSVQSQIQ PITDTVNLGS GNDTVYGGGG NLAAYGGAGN
DTLIGGDGND ALRGGADNDY LSGGRGNDVL RGDSGNDVLI GGLGHDILTG GSGEDLFKWV
DGDLDGSTDR ITDFHLSEKD KIDLSDLFDN PSEQEVTALL DSIKSTVQGD DHSSSFKVEK
NDGSSVTIQL DGVSSVELIN NLASIIQIKE D
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