Gene VC0395_A1224 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1224 
Symbol 
ID5135734 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1284129 
End bp1284998 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content45% 
IMG OID640532682 
ProductLysR family transcriptional regulator 
Protein accessionYP_001217168 
Protein GI147674340 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGTTC GACAACTGCG TCACTTTGTG ACTGTGGCTG AATGGGAAAG TTTTACCTTA 
GCCGCGCAGC AACTACATAT TGCGCAGCCT GCACTGAGTA TTTCGATTAA AAAATTTGAG
CAGCAGCTCG GTGTTACTCT GTTTAAAAGG GATGAAAGAA AAGTTGCGCT GACCCATGAA
GGTGCAGTGT TGCTTGAACA TGCCAAGCGC ATTTTGCAAC AAGTCAATGA TGCCCAATTG
GCGGTTGATG AGCTCAAAGG TGTTGTGAAA GGCGAGGTGC GTCTTGGCGC GCCAAGCATG
ATGGGCTCTT ACTTTTTCCC GCAAATCATT ATGGCGTTTA AAAGCCACTT TCCGAATCTG
AAAATGACGG TGATTGAAGC GGGTACTCAA TCGATCCGTA CAATGCTGCT CTCAGGCGAG
TTGGATATTG GGGTGATTTT GAATCACGAT CTGCCGGACG ATTTGGCTGC AGATCCGCTG
CTCTCTTCGC AAATGGTTGC TGTAGTCGGC AAAAATCATG AACTAGCTGA ACGTCGGCAT
CTTACTTTTG CCGAGTTTTT TGAGCATGAA CTGGTAATGT TTAAACCCGG CTATTTTCAC
CGAGATTTTA TCGATAAAGT GTGCCGAGAA CATAAGTTTA CTGCAGATTT TTCTTTTGAA
ACCAATTTGT TACCTATGAT TTTAAGCATA GTGAAACATG AATATGCGAT TACCGCGCTG
CTGGAGTTGG TGTCCAGCAA TGAACCGGAA GTGAAGGCGA TTCCGTTTGA ACCGCCGGTG
TGGCTTGATC TTGCATTGGC TTGGCGTAAA GAAGGTTATC TGTCCAATGC CGACCGTACT
TTCATCGAGT TTGTGAAAAA GTACGTTTAG
 
Protein sequence
MEVRQLRHFV TVAEWESFTL AAQQLHIAQP ALSISIKKFE QQLGVTLFKR DERKVALTHE 
GAVLLEHAKR ILQQVNDAQL AVDELKGVVK GEVRLGAPSM MGSYFFPQII MAFKSHFPNL
KMTVIEAGTQ SIRTMLLSGE LDIGVILNHD LPDDLAADPL LSSQMVAVVG KNHELAERRH
LTFAEFFEHE LVMFKPGYFH RDFIDKVCRE HKFTADFSFE TNLLPMILSI VKHEYAITAL
LELVSSNEPE VKAIPFEPPV WLDLALAWRK EGYLSNADRT FIEFVKKYV