Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1224 |
Symbol | |
ID | 5135734 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1284129 |
End bp | 1284998 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640532682 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001217168 |
Protein GI | 147674340 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAAGTTC GACAACTGCG TCACTTTGTG ACTGTGGCTG AATGGGAAAG TTTTACCTTA GCCGCGCAGC AACTACATAT TGCGCAGCCT GCACTGAGTA TTTCGATTAA AAAATTTGAG CAGCAGCTCG GTGTTACTCT GTTTAAAAGG GATGAAAGAA AAGTTGCGCT GACCCATGAA GGTGCAGTGT TGCTTGAACA TGCCAAGCGC ATTTTGCAAC AAGTCAATGA TGCCCAATTG GCGGTTGATG AGCTCAAAGG TGTTGTGAAA GGCGAGGTGC GTCTTGGCGC GCCAAGCATG ATGGGCTCTT ACTTTTTCCC GCAAATCATT ATGGCGTTTA AAAGCCACTT TCCGAATCTG AAAATGACGG TGATTGAAGC GGGTACTCAA TCGATCCGTA CAATGCTGCT CTCAGGCGAG TTGGATATTG GGGTGATTTT GAATCACGAT CTGCCGGACG ATTTGGCTGC AGATCCGCTG CTCTCTTCGC AAATGGTTGC TGTAGTCGGC AAAAATCATG AACTAGCTGA ACGTCGGCAT CTTACTTTTG CCGAGTTTTT TGAGCATGAA CTGGTAATGT TTAAACCCGG CTATTTTCAC CGAGATTTTA TCGATAAAGT GTGCCGAGAA CATAAGTTTA CTGCAGATTT TTCTTTTGAA ACCAATTTGT TACCTATGAT TTTAAGCATA GTGAAACATG AATATGCGAT TACCGCGCTG CTGGAGTTGG TGTCCAGCAA TGAACCGGAA GTGAAGGCGA TTCCGTTTGA ACCGCCGGTG TGGCTTGATC TTGCATTGGC TTGGCGTAAA GAAGGTTATC TGTCCAATGC CGACCGTACT TTCATCGAGT TTGTGAAAAA GTACGTTTAG
|
Protein sequence | MEVRQLRHFV TVAEWESFTL AAQQLHIAQP ALSISIKKFE QQLGVTLFKR DERKVALTHE GAVLLEHAKR ILQQVNDAQL AVDELKGVVK GEVRLGAPSM MGSYFFPQII MAFKSHFPNL KMTVIEAGTQ SIRTMLLSGE LDIGVILNHD LPDDLAADPL LSSQMVAVVG KNHELAERRH LTFAEFFEHE LVMFKPGYFH RDFIDKVCRE HKFTADFSFE TNLLPMILSI VKHEYAITAL LELVSSNEPE VKAIPFEPPV WLDLALAWRK EGYLSNADRT FIEFVKKYV
|
| |