| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1214 |
|---|
| Symbol | |
|---|
| ID | 5135813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1277648 |
|---|
| End bp | 1278796 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640532672 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001217158 |
|---|
| Protein GI | 147674169 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0247305 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTAT TTGAGCTATT TAAAGCAGAA TTAAAAGCAC TCTTCACCAA CCCTGTTGTC
GTGCTGACCG TTTTTGGTGG CGTGGTGTTT TATTCTTTCC TCTACCCGTT GCCTTACGCC
AAGCAGATCC CCCGTGAACA GACCGTTTCT GTGGTCAATC TCGATCAAAG TCAGGCCAGT
TTTCAACTGG AGCGGATGGT GGATGCCACG CCGCAAGTCA AAATTGTTCA GCGTGATCAC
ACCATTGCCG ATGCCAAACA AGCTTTCTTA GACAAGAAAG TCGCAGGCAT CTTGGTGATT
CCTGAACATT TCTACAAAGA TTTGCTACTG GGTAAAAGTC CAACGCTCGC TTATGCGGGT
GATGCTTCCT ATTTTCTGGT TTACGGTACG ATTGTTGAAG GTTTAGCCCA AGCGGGCGGT
ACACTCGCAG CACAAACCAA AGTCAGTCGT TTGGTCATCG AAGGTGAACC GATGGCGTTT
GCCGCGCAGC ATTTCTCGCC AACCAATGCC AACCTGAAAC CCACTTTTAA CCCACGTATG
GGCTATGTCG ATTACGTCGT ACCCGCCGTT TTTGTATTGA TCCTGCAGCA AACGCTGATC
ATGGCGGCTG GATTGATGGT TGGGACACAA AAGCAAGGTC ACGGCTATTG GAGCCGAGTC
GCCCCTGCCA AACTGTTGTT AGTGCGTAGT TTTGTGCTGG TTGCGGTCTA CTACTTGCTG
AGTCTTTATT ATTTCGGTGC CAGTTTTGAT TTGCACGGCG TGAATACTTT AGCAAAGCCA
AGTGATCTCA TCAGTTTGCT CTTGCCGTTT TTATTAGCCT GTAATTTTGT CGGTATTGCG
TTGGGAGCAG TGACTCCAAG ACGCGAACTG GTCACTTTGG TGGTGTTAAT TAGCTCCATG
CCACTGATTT TTACCGCTGG ATTTATTTGG CCGTTGGAAA TGATCCCTGC GCCTTTAGTC
TGGCTTGCGC AGTGCTTCCC AAGCACACCG GCAATCCAAG GCTTTCTGGG TTTAAACCAA
ATGGCGGCCA GTTGGTCAAC CATAGCACCA AAATGGACAC TCCTTTGGGC ACAGGCTTTG
GTATGGGGCG GTTTGGCGTT TTATCTTTTA CGCCGAGATC GCCAGCGTAC CGCTAAACAC
CCACAATAA
|
|---|
| Protein sequence | MTLFELFKAE LKALFTNPVV VLTVFGGVVF YSFLYPLPYA KQIPREQTVS VVNLDQSQAS
FQLERMVDAT PQVKIVQRDH TIADAKQAFL DKKVAGILVI PEHFYKDLLL GKSPTLAYAG
DASYFLVYGT IVEGLAQAGG TLAAQTKVSR LVIEGEPMAF AAQHFSPTNA NLKPTFNPRM
GYVDYVVPAV FVLILQQTLI MAAGLMVGTQ KQGHGYWSRV APAKLLLVRS FVLVAVYYLL
SLYYFGASFD LHGVNTLAKP SDLISLLLPF LLACNFVGIA LGAVTPRREL VTLVVLISSM
PLIFTAGFIW PLEMIPAPLV WLAQCFPSTP AIQGFLGLNQ MAASWSTIAP KWTLLWAQAL
VWGGLAFYLL RRDRQRTAKH PQ
|
|---|
| |