| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1192 |
|---|
| Symbol | alsS |
|---|
| ID | 5136482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1254634 |
|---|
| End bp | 1256337 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640532650 |
|---|
| Product | acetolactate synthase |
|---|
| Protein accession | YP_001217138 |
|---|
| Protein GI | 147673632 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | [TIGR02418] acetolactate synthase, catabolic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.37842 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCCA ACATTCACTT GCGCAGCGGA GCACAACTTA TCGCCCAACA GCTTGAAGCT
ATTGGTGTGC GTTATGTCTT CGGCATTCCG GGGGCCAAAA TCGACCGTCT TTTCGACGCG
ATTGAGGATA CCAAAATCCA AATGATCCCA GTCCGTCATG AAGCGAATGG CGCTTTTATG
GCGGGTATTA TGGGGCGTCT TTCAGGTCGA GCGGGAGTCA CCTTAGCCAC ATCGGGCCCC
GGCTGCGGCA ACCTTGTAAC AGGCGTCGCG ACAGCCAATT CTGAAGGCGA TCCGATGATC
GCTATTGGCG GCGCAGTCAA ACGTGACTAT CAACAAAAGC AGACCCACCA GAGCATGGAT
ACGGTGAGTA TTTTTCGTTC TATCACCAAA TACAGCGCCG AAATTCAACA TGTCGATGCC
ACCAGCGAAG TCATGGCTAA TGCATTTCGT CTCGCCGAAT CGGGTCGCCA AGGCGCGTGT
TTTATCAGCG TACCGCAAGA TGTGCTGGCC GATAAAACCT CAAGCGAAAT TATTATCCCC
AGTGCTTATC AGCCCACGGC TGAAGCCGAC CCAGACAGTT TGCAGGAAGC CGTAGAACGG
ATTCAAAAAG CGCAGCGCTG CGTCGTATTA CTCGGACTGC ATGCCAGCCA CCAAGCCACT
GCTGAAGCGG TCAGCGCTTT TTTACATAAA ACCCAGTTAC CTGTCGTGGG CACCTACCAA
GCCGCTGGCG CAGTAGACAT CAACTACTAT CACCATTTCG CCGGACGAGT CGGCTTATTC
AATAATCAGC CCGGAGATGT GCTGCTTAAA GAGGCCGATT TGATCATCAC CATCGGTTTT
AATCCAATCG AGTACGATCC TGAGCTATGG AATAGCCAGC GCTGTCCTAT CGTTCATATC
GATATTGAGC CAGCGCAGTA TCAAATCCAC TACCAGCCAT GCCTACAAAT TGTCGGTAAC
ATTGCCAGTA ATTTGGCGGC ACTCTGCCGC CCACTACCCG GTTTTACTCG CCTCTCCCCG
ACTGCATTAG CGATTTTGGA AGAAGTGACT CAGCAGCGTC ACGCCATCAA AGCCTATCCT
TTGCGCTATC AAAATGCGGG ATTTCATCCG CTAACCTTGA TTAAAACCAT GCAAGCGATC
ATCAAACCCG ATACCACCCT CTGTCTCGAT ATGGGGAGTT TCCATATATG GATTGCGCGC
TATCTGAGCT GTTTTCGTGC ACGGCAGATG CTGGTATCTA ACGGACAGCA GACCATGGGC
GTTGCCCTAC CTTGGGCGAT TGCGGCCAGC TTACTCAAAC CCGGCCATAA AGTCGTTTCA
GTATCCGGTG ATGGCGGCTT TATGCAATCA AGCATGGAGC TCGAAACCGC GGTGCGCCTC
AAATGCAATA TCGTACACAT CATTTGGGTC GATAACGCTT ACAACATGGT CGAGATGCAG
GAAGTGCAGA AATACCATCG CGCTGCTGGG GTAAAATTCG GCCCTATTGA TTTTAAAGCC
TACGCCGAAT CCTTTGGCGC TCGAGGCTAC GCCATCACGC AACCCGATCA GTTGCTCCCT
ACTCTGCGCC AAGCGATGGA AGTCGAGGGC CCCGCCGTCG TCGCGATTCC AGTCGATTAC
TCGGATAACC CCAAATTGAT GCAAGCGCGC ACCGAAGCCA ATCAAGATCC CGTATTTCAA
ACCCTAGAAG GAGTTTTCGC ATGA
|
|---|
| Protein sequence | MQSNIHLRSG AQLIAQQLEA IGVRYVFGIP GAKIDRLFDA IEDTKIQMIP VRHEANGAFM
AGIMGRLSGR AGVTLATSGP GCGNLVTGVA TANSEGDPMI AIGGAVKRDY QQKQTHQSMD
TVSIFRSITK YSAEIQHVDA TSEVMANAFR LAESGRQGAC FISVPQDVLA DKTSSEIIIP
SAYQPTAEAD PDSLQEAVER IQKAQRCVVL LGLHASHQAT AEAVSAFLHK TQLPVVGTYQ
AAGAVDINYY HHFAGRVGLF NNQPGDVLLK EADLIITIGF NPIEYDPELW NSQRCPIVHI
DIEPAQYQIH YQPCLQIVGN IASNLAALCR PLPGFTRLSP TALAILEEVT QQRHAIKAYP
LRYQNAGFHP LTLIKTMQAI IKPDTTLCLD MGSFHIWIAR YLSCFRARQM LVSNGQQTMG
VALPWAIAAS LLKPGHKVVS VSGDGGFMQS SMELETAVRL KCNIVHIIWV DNAYNMVEMQ
EVQKYHRAAG VKFGPIDFKA YAESFGARGY AITQPDQLLP TLRQAMEVEG PAVVAIPVDY
SDNPKLMQAR TEANQDPVFQ TLEGVFA
|
|---|
| |