| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1146 |
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| Symbol | |
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| ID | 5137543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1206026 |
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| End bp | 1207411 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640532604 |
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| Product | multidrug efflux protein |
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| Protein accession | YP_001217092 |
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| Protein GI | 147675290 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.292586 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGAGAACT CTGTGCATCG TTACAAAAAA GAAGCATCAA ATTTAATTAA ACTCGCGACA
CCCGTACTGA TTGCCTCAGT CGCGCAAACG GGTATGGGCT TTGTCGATAC CATCATGGCG
GGTGGTGTCA GTGCGATAGA CATGGCCGCG GTATCGATCG CAGCCAGTAT TTGGCTACCT
TCCATTTTGT TTGGCGTGGG TTTGCTGATG GCTTTAGTGC CGGTCGTTGC CCAGCTCAAT
GGCGCAGGTC GCCAACACAA GATTCCGTTT GAAGTTCATC AGGGGTTGAT CCTCGCGTTA
TTGGTTTCGG TCCCGATCAT TGCGGTACTC TTTCAAACTC AATTCATCAT TCGGTTTATG
GATGTAGAAG AGGCAATGGC GACCAAAACC GTCGGTTATA TGCACGCCGT CATTTTTGCG
GTCCCCGCTT ACTTACTGTT TCAGGCACTG CGCAGTTTTA CCGATGGTAT GTCACTGACC
AAACCTGCGA TGGTGATTGG TTTTATTGGG TTATTGCTCA ATATCCCTCT CAACTGGATT
TTCGTTTACG GGAAATTTGG CGCACCAGAG CTAGGCGGTG TGGGTTGTGG CGTTGCAACC
GCGATTGTGT ATTGGATCAT GTTGCTGCTG CTACTGTTTT ACATCGTGAC CTCTAAGCGT
CTGGCACATG TAAAAGTGTT TGAGACTTTC CATAAACCAC AGCCAAAAGA GTTGATCCGT
CTATTTCGCT TAGGTTTTCC TGTTGCAGCC GCCCTCTTTT TTGAAGTGAC TCTTTTTGCT
GTGGTCGCAC TTTTAGTGGC ACCGTTAGGG TCAACTGTCG TGGCGGCACA CCAAGTGGCG
CTCAATTTCT CTTCTTTGGT GTTTATGTTC CCAATGAGTA TTGGTGCCGC GGTCTCCATT
CGTGTTGTCC ATAAGTTAGG TGAGCAAGAC ACCAAAGGCG CTGCAATTGC AGCCAATGTG
GGTTTAATGA CTGGCCTTGC CACTGCGTGT ATTACCGCGT TGCTCACCGT GTTGTTTCGT
GAACAGATCG CGCTGCTGTA TACCGAAAAC CAAGTGGTGG TAGCGTTAGC GATGCAGCTC
TTACTGTTTG CGGCAATCTA TCAATGTATG GATGCGGTAC AAGTTGTCGC CGCAGGATCA
CTGCGTGGCT ATAAAGATAT GACAGCGATT TTCCACCGTA CATTTATCTC CTACTGGGTA
CTTGGCTTGC CCACCGGTTA TATCCTAGGG ATGACCAACT GGCTGACGGA GCAACCCTTA
GGTGCCAAAG GTTTCTGGCT CGGATTTATC ATCGGACTCT CGGCGGCCGC ACTGATGCTA
GGACAGCGTT TGTACTGGCT GCAAAAACAG AGTGATGACG TACAGTTACA CCTTGCAGCA
AAATAA
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| Protein sequence | MENSVHRYKK EASNLIKLAT PVLIASVAQT GMGFVDTIMA GGVSAIDMAA VSIAASIWLP
SILFGVGLLM ALVPVVAQLN GAGRQHKIPF EVHQGLILAL LVSVPIIAVL FQTQFIIRFM
DVEEAMATKT VGYMHAVIFA VPAYLLFQAL RSFTDGMSLT KPAMVIGFIG LLLNIPLNWI
FVYGKFGAPE LGGVGCGVAT AIVYWIMLLL LLFYIVTSKR LAHVKVFETF HKPQPKELIR
LFRLGFPVAA ALFFEVTLFA VVALLVAPLG STVVAAHQVA LNFSSLVFMF PMSIGAAVSI
RVVHKLGEQD TKGAAIAANV GLMTGLATAC ITALLTVLFR EQIALLYTEN QVVVALAMQL
LLFAAIYQCM DAVQVVAAGS LRGYKDMTAI FHRTFISYWV LGLPTGYILG MTNWLTEQPL
GAKGFWLGFI IGLSAAALML GQRLYWLQKQ SDDVQLHLAA K
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