Gene VC0395_A1128 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1128 
Symbol 
ID5136067 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1188394 
End bp1190427 
Gene Length2034 bp 
Protein Length677 aa 
Translation table11 
GC content48% 
IMG OID640532586 
Productsensor histidine kinase 
Protein accessionYP_001217074 
Protein GI147673472 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCTA AATGGGCTTG GTGGCAAAAA TGGCGACACC GTTTTCAAAC CACCGTGCGC 
TATCGGCTGT GGATTCTGAC CTCAGCGCCA ATTTTTCTCA CACTGCTGGC GCTGATTGCG
ATCACCATTT ACTGGTCACT GCATTACACC TGGAACAGTG CTTTAATTGA TGTGTCTGAG
CGGTTAGGCG TGGCGCAAAA CAGTGTAACT CTACTGCAAC AGAAACAAGC CAATCACGTT
CGCGCGTTTG CAGAATCGTA CGATTTTCGC AAGCGTCTGC AAGAGCCGGA AACCCTCAGT
ACTTTGCCAC GTTGGGTGCA AAATCAAAAA AATCGCTATG GCTTAGATTT CTTAAGTTTT
GAGCGTGTGG ATAGCTTAGA GCAGAAGTTT CGCTATCTCG ATCTCACCAA GCGTGAATCC
TTCTTTGATG TACTTAGTGC CGATGAGCTA GAAAAGCTCG ATCCGGATTT AGCTAAGCAA
GCGCAAATCC CGATTCTTAA TTCTCAACAG ATCGAAACTC GGGGATTAGT CAGTCGTACC
GTGATTCCAG TGCGCAATGA CTTCGGTGAG ATCATAGGTT TTTTGGATGG TGGTTTACTG
CTCAATAACA GCACAACCTT AGTCGATCAA ATTCGAGATC TCATCTACCC AAGTCATCAA
GATCAGCTTC GCCCAACGGG CACTTTAACC CTGTTTTTGG ATGACTTACG CGTCAGCACC
AACGTGCCTT TAGACAGTAA TATCCATGCA GGTCGCGCGA TAGGCACACG GGTGTCATCC
GAAGTGTTTA ATCAAGTGCT CAAAGGTGGT CAGCAGTGGG TTAATCTGGC GTATGTGTAT
GATGCTTGGT ACATCACCGC GTATGAGCCG ATTCGCGATC AATACCACAA CGAAATTGGC
ATGCTGTACA CCGGCTACTT AATGTGGCCG TTTTTAAAAG CTTACGTGAC CAATATTTTA
GAAGTCGGGA TCATCACGCT TTTCCTGCTG GTGATTTCAG GCCTGTTTGT GTACCGTGGC
TCGCGCGATC TGTTTCGTCC TATCGAGCGC ATTCACCGTG TAGTGAAAAT GGTGCAACTT
GGTAAAAACC AGCGTATTGG TCAAATTGGG CTTGATGACA AACATGAACT CGCTCAGCTT
GCGAAGCAAT TCGACAACAT GCTGGATCAG TTGCAGCAAC GGAATGAAGA AATCGTGCAA
GCCGCGCATG AGTTAGAAGC AAAAGTGCAA TCGCGCACCG CCAGTTTGCA AGAGAAAACC
GCGCAGCTTG AGCACCACAT TGCCTTGCTT AACCAAACGC GCAATAAGTT AGTGGTGCAT
GAAAAACTGG CGGCACTTGG TGAGCTAACC GCGGGGATTG CCCATGAAAT CAATAACCCT
ACCGCCGTGA TTCTCGGTAA TACCGAGTTA ATTCGTTTTG AGCTTGGTGC TGATGCGAGC
AGAGTCGAAG AAGAAATTGA TGCCATCTTG CTGCAAATCG AGCGGATCCG AAACATCACG
CGCAGCTTGT TGCAATACAG TCGCCAAGGC GGAGTGCAGG ACGAAATCAC GTGGCAACAC
GTCAATCCGA TCATTGATGA GAGTATTACC TTAGTCAAAA CTGGTTCGAA AAAGCGCGAT
ATTGAATTTG TGCTGGAACT GAAAGCGCAC AATTCGGTGG AGGTGAATCG CCATCAACTG
CTGCAAATTC TGGTTAACCT ACAGATGAAC GCGATTCATG CCATGAACGG CAAAGGCCGC
ATCACGATAC GTAGCGAAGA TTGGGTTGAA GAGGGGCAAA ACCGCGGAGC GGTGATCCAC
ATTGAAGATC AAGGTTGTGG CATTAAGCCA GAAAACCTCA AACGTATTTT CGATCCGTTT
TATACCACCA AACGTGAGGG GACAGGGCTT GGGCTTTCGG TTTCACAAAG TTTGCTTAGC
CAGTCTGGCG GAGAAATTAA AGTGCAGTCT GAATTGGGCG TGGGTAGCAC TTTCAGTATC
TTCCTGCCTT CCAAAAATGA AGCGAAACTT CGCGAGACCT TGCTGCTTCA ATAA
 
Protein sequence
MKAKWAWWQK WRHRFQTTVR YRLWILTSAP IFLTLLALIA ITIYWSLHYT WNSALIDVSE 
RLGVAQNSVT LLQQKQANHV RAFAESYDFR KRLQEPETLS TLPRWVQNQK NRYGLDFLSF
ERVDSLEQKF RYLDLTKRES FFDVLSADEL EKLDPDLAKQ AQIPILNSQQ IETRGLVSRT
VIPVRNDFGE IIGFLDGGLL LNNSTTLVDQ IRDLIYPSHQ DQLRPTGTLT LFLDDLRVST
NVPLDSNIHA GRAIGTRVSS EVFNQVLKGG QQWVNLAYVY DAWYITAYEP IRDQYHNEIG
MLYTGYLMWP FLKAYVTNIL EVGIITLFLL VISGLFVYRG SRDLFRPIER IHRVVKMVQL
GKNQRIGQIG LDDKHELAQL AKQFDNMLDQ LQQRNEEIVQ AAHELEAKVQ SRTASLQEKT
AQLEHHIALL NQTRNKLVVH EKLAALGELT AGIAHEINNP TAVILGNTEL IRFELGADAS
RVEEEIDAIL LQIERIRNIT RSLLQYSRQG GVQDEITWQH VNPIIDESIT LVKTGSKKRD
IEFVLELKAH NSVEVNRHQL LQILVNLQMN AIHAMNGKGR ITIRSEDWVE EGQNRGAVIH
IEDQGCGIKP ENLKRIFDPF YTTKREGTGL GLSVSQSLLS QSGGEIKVQS ELGVGSTFSI
FLPSKNEAKL RETLLLQ