| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1110 |
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| Symbol | yebU |
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| ID | 5136882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1169267 |
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| End bp | 1170778 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640532568 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_001217056 |
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| Protein GI | 147674343 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.153136 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTGCTGCT TTTCTACTTT TCGGCGATCC TTTATGTCAC CGCCTTATCT GGTTATAATC
GCCGCCCTTA TTCATCTACG GAACTCGCTT GTGCATCCGA ACATTTCCCT TCCCGAACCA
TTCATCGCGT CGATGGCGAA AATACTGCCA GATCCCACTC AGCTTGCTGA TTTTATTGCA
GCTTGCCAAA GGCCTCTGCG CAAAAGTATT CGCGTTAATA CACTCAAAAT TTCTGTCGCA
GAGTTTTGTC AGCGCGCCGC TGAGAAAGAG TGGCAACTGA CGCCAGTACC TTGGTGTGAG
AATGGGTTTT GGATTGATGC CGATGAAAGC TTAGTCCCGC TGGGTAATAC CGCTGAGCAT
ATGGCTGGGC TGTTTTATAT CCAAGAAGCC AGTTCGATGA TGCCCGTTTC AGCCCTGTTT
ATGGGGAATG CGCACTATGA CTCTGTGTTG GATATGGCGG CGGCTCCGGG CTCGAAAACC
ACGCAAATGG CCGCCTTGAT GGACAACCAA GGCGTGTTGG TTGCCAATGA GTTTTCCGCA
AGCCGAGTGA AAGTGCTGCA CGCCAACATT GAGCGCTGTG GGATTCGTAA TACCGCACTA
AGTAATTTTG ATGGTTGTGT GTTTGGAGGT TGGTTGCCTG AGCGTTTTGA TGCGGTGTTG
ATCGACGCGC CCTGCTCTGG TGAAGGTACA ATTCGCAAAG ATCCTGATGC GATGAAAAAC
TGGAGCCTTG AGTCGATTCA AAGTATTGCC AACACTCAAA AAGCCTTAAT TGAAAGCGCA
TTTCAGGCGC TCAAAGTGGG CGGCACGCTG GTGTATTCAA CCTGTACCTT GAGCCGTGAA
GAAAATCAGC AAGTGTGCTG GCACTTAAAG CAGACATATG GTGATGCGGT TAGCTTTGAA
TCACTGGGTA ATTTATTTGA GCACGCATCG CTCGCCCTTA CCGAAGAAGG CTTCCTGCAC
ATTTTTCCGC AAATGTACGA TTGTGAAGGC TTTTTTGTCG CGAAAATTCG TAAACTAGCC
TCCGTGCCAA CGCCAGAGGT CAACAAGCGA TTAGGCAAGT TTCCGTTTAA CAAAGCGAGC
CATAAGCAGC AAGCGGAGAT TGCTCAGCAA CTTCACAAGT CTCTTGGTAT CGAGCTGCCC
TCGGATGCAC AGGTCTGGTT GCGCGATAAT GATGTGTGGC TATTCCCCGA AGCTTTAGAG
CCCTTATTGG GTGAGCTACG CTTTTCTCGC ATGGGAATAA AAATTGCTGA AGCACATAAA
TCGGGTTATC GATGGCAGCA TCAAGTGGCG ACTTGTCTTG CATCCTCAAG TGCGAGTCAC
AGTGTCGAGC TGGATACCAC GCAAGCACGA GAATGGTTTA TGGGCAGAGA TGTCAGACCA
GAAGGACAAA GTGGTCAAGG CGAAGTGATC ATCCGTTACG CTAACGATGT GATTGGGTTA
GGAAAATGGG TAGGCAATCG CGTGAAGAAT GGACTGCCAA GAGAGCTAGT TAGAGACAAA
AATCTATTTT GA
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| Protein sequence | MCCFSTFRRS FMSPPYLVII AALIHLRNSL VHPNISLPEP FIASMAKILP DPTQLADFIA
ACQRPLRKSI RVNTLKISVA EFCQRAAEKE WQLTPVPWCE NGFWIDADES LVPLGNTAEH
MAGLFYIQEA SSMMPVSALF MGNAHYDSVL DMAAAPGSKT TQMAALMDNQ GVLVANEFSA
SRVKVLHANI ERCGIRNTAL SNFDGCVFGG WLPERFDAVL IDAPCSGEGT IRKDPDAMKN
WSLESIQSIA NTQKALIESA FQALKVGGTL VYSTCTLSRE ENQQVCWHLK QTYGDAVSFE
SLGNLFEHAS LALTEEGFLH IFPQMYDCEG FFVAKIRKLA SVPTPEVNKR LGKFPFNKAS
HKQQAEIAQQ LHKSLGIELP SDAQVWLRDN DVWLFPEALE PLLGELRFSR MGIKIAEAHK
SGYRWQHQVA TCLASSSASH SVELDTTQAR EWFMGRDVRP EGQSGQGEVI IRYANDVIGL
GKWVGNRVKN GLPRELVRDK NLF
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