| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1099 |
|---|
| Symbol | |
|---|
| ID | 5137013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1151267 |
|---|
| End bp | 1155415 |
|---|
| Gene Length | 4149 bp |
|---|
| Protein Length | 1382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640532557 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001217045 |
|---|
| Protein GI | 147673706 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2902] NAD-specific glutamate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTACA AAGAGTTCGA TTTGGTAGAG AAAAATGGCG ATACCGAATT GACGCCAACC
AAAGACACCG GACTTGGCTT ATTCTCTGAC AACGAGCGAG TACGTAGCGT AAAACTCTCT
CAATTCCCAG ATTCAGCCAG ACTCGAAGCC AAAAAGCCTT TCCTGTTGAT CTTAACGAAA
GGCAATAAGC AATCGCGTAT CCATCGTCCT GCTTATACCG ACTATATCGG GATCAAAAAG
TTTGACGCGA AAGGCAAGGT GATCGGTGAG CATCGCTTTA CTGGCTTATA CACTTCCGCT
GTGTACAACC AAAGTGTTGA AGGCATCCCG CTGATCCGCG AAAAAGTAGG GCGCATTCTT
GCGGCCAGCG GCTACCGCCA AGGCTCTTAT GCCTACAAAG CCCTGCACAA TATTCTTGAA
AACTACCCAC GCGATGAGTT GTTACAAGCC CGTGAAGAAG AGCTGCTTGA AGTAGGCATG
GGCGTTGTAC AGATGCAAGA TCGTGATTTA CTGCGCCTGT TTGTACGTAA AGACCCATTC
GGACGTTTCT TCAGTTGCAT GGTGTATGTG ACCAAAGAGC GTTACAACAC TGAGCTGCGC
CGTAAGACAC AACAAGTGTT CAAACAGTAT TTTGGCTGTG AGCAAGATGT TGAATTTACA
ACCTATTTCT CAGAAAGCCC ACTGGCGAGA ACTCACTACA TTGTGCGTGT CGACAATAAC
AACATCAACG TAGATGTGAA AAAGATAGAG CAGAATTTAA TGGAAGCCTC AACCTCGTGG
GATGATCGTC TCGCAGAAGC CATTGTCGCC AATTTCGGTG AAAGTCGTGG ATTACCGCTG
TCAAAAGAGT ATCAACGTGC CTTCCCACGT TCTTACAAAG AAGATGTGAT GCCGGGCTCT
GCACTGGCAG ATATCGAGCA CCTCGAAGCG TTAGATGAGC ATAATAAACT GGGCATGCTG
TTCTACCGTT TACAAGAGAC AGCCAAAGAC TCCAAAGCGG TGCGCTTAAA GCTGTATCAC
AAAGACGAAC CCATCCATCT ATCAGACGTT ATGCCGATGC TAGAAAACCT CGGCTTACGC
GTGATTGGTG AATCGCCTTA TGAAGTAGTG AAAGCCAATG GCCAAGTGTA CTGGATCCTT
GATTTCTCTA TGCTACATAA GAGTGATAAG CAGGTGGATC TGCGTGAAGC ACGCGACCGA
TTCCAACAAG CGTTTGCCGC TATCTGGGCA GGAGAGCTGG AGAGTGATGG CTTTAACCGT
TTGATTTTAG GTGCATCACT GTCAGGTCGT GAAGTTTCGA TCCTGCGTGC TTATGCGCGT
TATATGCGTC AAGTCGGCTT CCCATTTAGC CAGCACTATA TTGAAGATAC ACTCAGCCAC
CATCCCGATC TTGCACAAGG ATTGGTGGAT CTTTTCGTGC GTCGTTTCGA TCCGAAATAC
AAAGGCGGAG AAAAGGGCCA AGCTGAAATC ATCAAATCTC TGACAGAGCA ATTAGATCAA
GTACAGAGTC TCGACGATGA TCGAATTATC CGTCGCTATA TGGAGATGAT CAACGCGACG
CTGCGCACCA ACTACTATCA GTTGGATGAG CACAAGCAGA ACAAACCTTG GCTATCTCTC
AAAATGAAGC CAAGTGAGAT CCCTGAAATT CCTGCACCAG TGCCTGCGTT CGAAATCTTC
GTCTATGCCC CAGACATTGA AGGGGTGCAT TTGCGCGGTG GTAAAGTCGC TCGTGGTGGG
CTGCGTTGGT CTGATCGCCA AGAAGATTTC CGTACTGAAA TTTTAGGCTT GGTCAAAGCA
CAACAAGTGA AAAATACGGT CATCGTGCCT GTTGGTGCGA AAGGTGGCTT TGTTTGTAAG
AAACAGTATC TCTACACCAC ACGCGATGAG ATTTTTGCAG AGGGCCAACG CTGCTACAAA
CGCTTTATTC GCGCTTTACT CGACGTAACG GATAACATTA TTGAAGGGCA AGTGGTTCCG
CCGAAGAACG TGGTTCGTCA TGATGAAGAT GACCCTTATT TGGTGGTGGC TGCGGATAAA
GGCACCGCAA CCTTCTCTGA TTTAGCAAAC TCAGTGTCAG CGGAATACCA ATTCTGGCTC
GGTGATGCTT TTGCTTCAGG GGGGGCAAAT GGTTATGACC ACAAAGCGAT GGGCATTACC
GCCAAAGGGG GTTGGGAATC GGTAAAACGC CATTTCCGTG AAATGGGCAT TGATTGTCAA
ACCACCGATT TTACCGCGAT TGGCATCGGT GACATGGCCG GCGACGTGTT TGGTAACGGT
ATGTTGTTAT CAAAACATAT TCGCCTACTG GCGGCCTTTA ACCATATTCA TATCTTCATT
GATCCAACCC CGGATTCTGC GAGCAGTTGG GAAGAGCGTA ACCGCTTGTT TAATCTGCCT
CGTTCAAGTT GGGAAGATTA CAATCCGAAG CTGATTTCTA AAGGTGGTGG TGTCTTCTCG
CGTAAAGCAA AAGCGATTAC GCTGACGCCT GAAATGCAGA AGATGCTCAA CACTAAAAAA
ACCACGTTGG CACCCAATGA GTTGATCAAA ATGATCCTAA AAATGGAAGT CGATCTCCTC
TGGAATGGTG GCATTGGTAC CTATGTGAAA TCATCCATTG AAACACATAC CGATGTCGGT
GACCGAGCCA ATGACGGATT ACGTGTCGAT GGACGTGAAG TAAACGCTAA AATCATCGGC
GAAGGCGGTA ACCTTGGTAT GACTCAGCGC GGTCGTATCG AGTTTGCACT CAAAGGTGGA
CGCGTTAACA CGGACTTCGT GGATAACGTC GGTGGCGTAG ACTGTTCCGA TAACGAAGTT
AACATCAAGA TCTTCCTCAA TGGCTTGGTG GCTAATGGTG ATTTAACACT CAAACAGCGC
AACCAGATCC TTGAGTCGAT GAAAGATGAA GTAGGAAGCA TCGTGATTGA AGATGCTTAT
GGACAATCTG AATCGATTTC CGTGACCGAA GCGCAGGGCG TATCACTCAT GAAAGAACAG
ATCCGTTTTA TCCATCACAT GGAAAAAGCG GGGTATTTGG ATCGTGCTTT AGAGCACATT
CCGGATGATG AAACTCTACT TGAGCGTGAA AGACAGGGCA TGGGATTAAC ACGTCCTGAA
CTTTCGGTGC TGATGGCCTA CGGCAAAATG GCGTTGAAAG AAGAACTGGC CAGTGAAGAG
ATTGCGCAAG ATGAATTCCA TGCCAAACAA TTGGTTAATT ACTTCCCAAC TGAGTTACGC
GGTCACTATG CGCAGCAGAT GGTGAACCAT CCGCTACGAG TAGAAATCAT CGCGACAGCC
TTAGCAAACC AAATGGTTAA CGAAATGGGG TGCAACTTCG TTACGCGTTT ACAAGAAGAG
ACCGGCTCTA GCGTGGTCGA TATTGCGAAT GCGTATGCGG CCGCGCGTGA GATTTACGGT
TTAGGTTCCG TGCTCGAAAA AGTACGCAAA CTGGACAACA TAGCGCAAAG TAGCGCCCAA
TATGATGTCA TGTTCCTCGT GCGTCGCACT TTGCGTCGCC TGACTCGCTG GTTACTGCGC
AACCGTACAG GTAAGCCATC CGTGATAGCA ATGGTCGAAC GCTATCAAGA GGATGTCAAA
GCTATCACCG AACAATTGGA TAAAGTTTTG GTGAAAGAGG AGATTGTTGA GCATAATTCC
ATGGCTGAAA ACTGGATAGA GAAGGGCATC GAGAAAGAAC TTGCGCATTA TGTGGCGCGT
CTTTCTAGCC TTTACTCTGT ACTGGATATC TCGGCCGTGG CGAAAGAGAA AGGCATCGCA
GTCACTCAAA CAGCGAAGCT TTATTTCCAT CTCGGCGATC GTTTATCTCT GCACTGGTTC
TTGAAGCAAA TCAACCACCA AGCCGTTGAT AACCATTGGC AAGCATTAGC AAGAGCCTCT
TTCCGTGAGG ATCTCGATTG GCAGCAACGC CAGTTAACTG CTCAAGTGCT CAGTAGCAAT
TTGAGTGATG CTCAACAGGA AATTGAACTG GCACTTGATA AATGGCTAGA GCGTAACCAA
GTCTCAATAA GCCGTTGGGA GAACATCCTC AGCGAGTTTA AAGTCGGTAC CGTTCATGAA
TTTGCCAAAT TCTCAGTGGC ATTGCGAGAG TTGACCTTGC TCAACTTAAA TTGTCTCACT
GTAGAATAA
|
|---|
| Protein sequence | MGYKEFDLVE KNGDTELTPT KDTGLGLFSD NERVRSVKLS QFPDSARLEA KKPFLLILTK
GNKQSRIHRP AYTDYIGIKK FDAKGKVIGE HRFTGLYTSA VYNQSVEGIP LIREKVGRIL
AASGYRQGSY AYKALHNILE NYPRDELLQA REEELLEVGM GVVQMQDRDL LRLFVRKDPF
GRFFSCMVYV TKERYNTELR RKTQQVFKQY FGCEQDVEFT TYFSESPLAR THYIVRVDNN
NINVDVKKIE QNLMEASTSW DDRLAEAIVA NFGESRGLPL SKEYQRAFPR SYKEDVMPGS
ALADIEHLEA LDEHNKLGML FYRLQETAKD SKAVRLKLYH KDEPIHLSDV MPMLENLGLR
VIGESPYEVV KANGQVYWIL DFSMLHKSDK QVDLREARDR FQQAFAAIWA GELESDGFNR
LILGASLSGR EVSILRAYAR YMRQVGFPFS QHYIEDTLSH HPDLAQGLVD LFVRRFDPKY
KGGEKGQAEI IKSLTEQLDQ VQSLDDDRII RRYMEMINAT LRTNYYQLDE HKQNKPWLSL
KMKPSEIPEI PAPVPAFEIF VYAPDIEGVH LRGGKVARGG LRWSDRQEDF RTEILGLVKA
QQVKNTVIVP VGAKGGFVCK KQYLYTTRDE IFAEGQRCYK RFIRALLDVT DNIIEGQVVP
PKNVVRHDED DPYLVVAADK GTATFSDLAN SVSAEYQFWL GDAFASGGAN GYDHKAMGIT
AKGGWESVKR HFREMGIDCQ TTDFTAIGIG DMAGDVFGNG MLLSKHIRLL AAFNHIHIFI
DPTPDSASSW EERNRLFNLP RSSWEDYNPK LISKGGGVFS RKAKAITLTP EMQKMLNTKK
TTLAPNELIK MILKMEVDLL WNGGIGTYVK SSIETHTDVG DRANDGLRVD GREVNAKIIG
EGGNLGMTQR GRIEFALKGG RVNTDFVDNV GGVDCSDNEV NIKIFLNGLV ANGDLTLKQR
NQILESMKDE VGSIVIEDAY GQSESISVTE AQGVSLMKEQ IRFIHHMEKA GYLDRALEHI
PDDETLLERE RQGMGLTRPE LSVLMAYGKM ALKEELASEE IAQDEFHAKQ LVNYFPTELR
GHYAQQMVNH PLRVEIIATA LANQMVNEMG CNFVTRLQEE TGSSVVDIAN AYAAAREIYG
LGSVLEKVRK LDNIAQSSAQ YDVMFLVRRT LRRLTRWLLR NRTGKPSVIA MVERYQEDVK
AITEQLDKVL VKEEIVEHNS MAENWIEKGI EKELAHYVAR LSSLYSVLDI SAVAKEKGIA
VTQTAKLYFH LGDRLSLHWF LKQINHQAVD NHWQALARAS FREDLDWQQR QLTAQVLSSN
LSDAQQEIEL ALDKWLERNQ VSISRWENIL SEFKVGTVHE FAKFSVALRE LTLLNLNCLT
VE
|
|---|
| |