Gene VC0395_A1039 details

Gene Information

• Locus tag: VC0395_A1039
• Symbol: potA
• ID: 5137271
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 1084202
• End bp: 1085335
• Gene Length: 1134 bp
• Protein Length: 377 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640532497
• Product: putrescine/spermidine ABC transporter ATPase protein
• Protein accession: YP_001216985
• Protein GI: 147673678
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components
• TIGRFAM ID: [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000000000251214
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGGAGAAA TACAGACGTT GAACGAACAA CATTCAGTAG GAAAGCCAGT CATTCGTTTA 
TCTGGCATTA GCAAAAGTTT CGATGGTAAG GAAATCATTG GTAACCTAAA TCTTGATGTG 
AATCATGGCG AGTTCTTAAC CATCCTAGGT CCATCGGGCT GTGGTAAAAC GACGGTGTTA 
AGAATGATTG CTGGTTTTGA AACTGCAGAT CAAGGTCAGA TTCTGCTAGA TGATCAAGAC 
GTTACTCAAG TTCCTGCTGA ACAACGACAC GTCAATACGG TCTTCCAAAG CTATGCTCTA 
TTCCCCCACA TGACAGTGTT CGAAAACGTC GCTTTTGGTT TGCGCATGCA AAAAGTCCCT 
CAAAGCGAAA TCGAGCCTCG TGTTATGGAA GCACTACGCA TGGTGCGCCT TGCCGAAATG 
GCACAGCGTA AACCGCATCA ACTTTCTGGT GGCCAGCAGC AACGTATCGC TATTGCGCGC 
GCAGTGGTTA ACAAACCTAA AGTACTGCTA CTTGACGAAT CGCTCTCCGC TTTGGATTAC 
AAATTGCGTA AACAAATGCA GAGCGAGCTC AAACAACTAC AACGTCAATT AGGCATTACC 
TTTATCTTCG TTACTCACGA TCAAGAAGAA GCGCTGTCTA TGTCAGATCG CATCATCGTT 
ATGCGTTTAG GCAAAATTGA ACAAGACGGC TCTCCTCGTG AAATCTACGA AGATCCAAAA 
AATCTCTTTG TTGCTCGTTT TATCGGCGAA ATCAACGTCT TCCAAGCAAC GACTATCGAT 
CGTATCGACG AAAAACGCAT CCGCGTTGAC ATCGAAGGTA TCGAGTCGAT TGTTTACTAT 
GAAGATGAAG TGAAGGCTGG TGACAAGCTG CAAGTGCTCC TCCGTCCTGA AGACTTACGT 
ATCGAAGAAA TCAAAGAGTC AGAAGAAAAA GGCATTGTGG GTCACGTGAC TGACCGTACC 
TACAAAGGCA TGACTCTGGA ATCAGTGGTA GAACTGGAAT CCGGTATGTG TGTGATGGTT 
AGCGAATTCT TTAACGAAGA TGATCCAGAT GTTGATCACT CTATCGGACA GAAAGTTGCC 
GTCACTTGGG TTGAAAGCTG GGAGGTAGTC CTCAATGATG AGCAAAAAGC TTAA 

 

Protein sequence

MGEIQTLNEQ HSVGKPVIRL SGISKSFDGK EIIGNLNLDV NHGEFLTILG PSGCGKTTVL 
RMIAGFETAD QGQILLDDQD VTQVPAEQRH VNTVFQSYAL FPHMTVFENV AFGLRMQKVP 
QSEIEPRVME ALRMVRLAEM AQRKPHQLSG GQQQRIAIAR AVVNKPKVLL LDESLSALDY 
KLRKQMQSEL KQLQRQLGIT FIFVTHDQEE ALSMSDRIIV MRLGKIEQDG SPREIYEDPK 
NLFVARFIGE INVFQATTID RIDEKRIRVD IEGIESIVYY EDEVKAGDKL QVLLRPEDLR 
IEEIKESEEK GIVGHVTDRT YKGMTLESVV ELESGMCVMV SEFFNEDDPD VDHSIGQKVA 
VTWVESWEVV LNDEQKA